PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5506s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 208aa    MW: 23588.6 Da    PI: 8.6658
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5506s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-1968123156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rrk+ ++tkeq + Lee F +n++++ +++++LA+ l+L++rqV vWFqNrRa+ k
  Araha.5506s0005.1.p  68 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 123
                          79999*************************************************98 PP
2HD-ZIP_I/II109.91.8e-3569157190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLEesF ++++L+p++K++la+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+rL+ eveeLr +
  Araha.5506s0005.1.p  69 RKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELR-A 157
                          69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-2053124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1858123IPR009057Homeodomain-like
PROSITE profilePS5007117.94565125IPR001356Homeobox domain
SMARTSM003892.2E-1767129IPR001356Homeobox domain
CDDcd000862.28E-1668126No hitNo description
PfamPF000461.8E-1668123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PfamPF021833.0E-9125159IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.9E-16125168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MALSPNSSSL DLTISIPNFS PSPSHGDHHG VRDLDINQTP KTEEDREWIM IGATPHVNED  60
DSNSGGRRRK KLRLTKEQSH LLEESFIQNH TLTPKQKKDL ATFLKLSQRQ VEVWFQNRRA  120
RSKLKHTEME CEYLKRWFGS LKEQNRRLQI EVEELRALKP SSTSALTMCP RCERLTDAAD  180
NDSNAVLEGA VLSSRSRMTI SSSSSLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573GRRRKKLRL
26672RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5506s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758370.0AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21.
GenBankAK1759650.0AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17.
GenBankEU3391860.0EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889607.11e-126homeobox-leucine zipper protein ATHB-X
SwissprotQ8GXM71e-125ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLD7KYG31e-124D7KYG3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1356__AT1G70920.11e-125(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.11e-117homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]