PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5323s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 519aa    MW: 58965.4 Da    PI: 4.4896
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5323s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.31.4e-22326383155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                          kpr+ Wt++LH++F+ea+e  GG+ekA Pk +le+   mk++g+t+++v+SHLQk+R+
  Araha.5323s0004.1.p 326 KPRMTWTEDLHQKFLEAIEIVGGIEKANPKVLLEClqeMKIEGITRSNVASHLQKHRI 383
                          79****************************886543339******************7 PP
2Response_reg62.32.5e-21361431108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vd + + + +++q++++  y +v+  +d+e+al++l  +++++++++ D  mpg+dGl++lk+i ++  +lp++++++ ++ e + +
  Araha.5323s0004.1.p  36 VLVVDTNFTTLLNMKQIMKQYAY-QVTIETDAEKALAYLtsCKHEINIVIWDFHMPGIDGLQALKSIGSKM-DLPVVIMSDDNQTESVMK 123
                          89*********************.9**999*********888888**********************6655.8***************** PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                          a   Ga d+++Kp+++e + 
  Araha.5323s0004.1.p 124 ATFHGACDYVVKPVKEEVIA 143
                          *************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.84E-2733158IPR011006CheY-like superfamily
SMARTSM004483.6E-1734145IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-2834157No hitNo description
PROSITE profilePS5011035.58335150IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-1836143IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.42E-1837154No hitNo description
Gene3DG3DSA:1.10.10.602.4E-20324386IPR009057Homeodomain-like
SuperFamilySSF466891.0E-12324386IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-19326384IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLVGKISGYE DNTRSLERET SEITSLLSQF PGNTNVLVVD TNFTTLLNMK QIMKQYAYQV  60
TIETDAEKAL AYLTSCKHEI NIVIWDFHMP GIDGLQALKS IGSKMDLPVV IMSDDNQTES  120
VMKATFHGAC DYVVKPVKEE VIANIWQHIV RKMLMSKPDV VPPVQSDLAQ SDGLDQDNAD  180
LKIVDEEPNI NEKQLITWTE EIQPVQSDLV QANELGQLND YSQIMNQDNM FNKAATKPRM  240
AWTEVIQPVQ SDLVQANDYS QIMNQGNMYN KAAKKPRLTW TEVFQPVQSY LVQTDGLDRD  300
YHDSITINGG NGRQSMEKKE AKKPRKPRMT WTEDLHQKFL EAIEIVGGIE KANPKVLLEC  360
LQEMKIEGIT RSNVASHLQK HRINVEEDQI PEQTQEDGWS TAYNRPAPSL QGSDNVNTTI  420
SPYLMNGRAV NQIQQNQYEN GYLTMNNNQF ITNPLPPLPY LDHQILNQQY QSPPQLNYLM  480
SNEEPQQASG IYATDLELTY PSLPYDPQEY LINQGLQF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5323s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160411e-148AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankCP0026841e-148CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869952.10.0LOW QUALITY PROTEIN: putative two-component response regulator ARR19
SwissprotQ9M9B91e-126ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLD7KE140.0D7KE14_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4015__AT1G49190.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.11e-178response regulator 19