PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5299s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 264aa MW: 29451.6 Da PI: 5.6521

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5299s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	53.3	6e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++de+v +i+ +P l+ska elf+ +l ++ + +t++ ++++v +ifdfl ++v + Araha.5299s0002.1.p 6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLRRGAKTVNSFHLKQCVHAFNIFDFLRETVGK 86 789************************************************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.8E-25	2	72	IPR009072	Histone-fold
Pfam	PF00808	2.2E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.1E-18	18	87	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLRRGAK 60 TVNSFHLKQC VHAFNIFDFL RETVGKVPDL GGSDAEDQSA TKRRKLVDES SYNDEDTTKT 120 TQMHEVKHTS GGRGRRGRGH GRGGGRTGSG LSLKFEEDLK DGSPGSSRTP SPEIRSLSHD 180 YTSWKKVASL NNHSNSVVKV RNFDLNVELD ENGDSATWLD RALEGSPDWP LLEINEMKID 240 PDQQQASSAN DEEDYDEESI DQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	142	RGRRGRGHGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5299s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002688	1e-131	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	T20D1	1e-131	AF296830.1 Arabidopsis thaliana BAC T20D1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873950.2	1e-161	dr1-associated corepressor
TrEMBL	F4K162	1e-139	F4K162_ARATH; Histone superfamily protein
STRING	AT5G19490.1	1e-140	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-140	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Araha.5299s0002.1.p