PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.52989s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 225aa    MW: 25230.7 Da    PI: 5.2966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.52989s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-172069255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  Araha.52989s0005.1.p 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAAFAYDVAARSISG 69
                          799******.**********66.....34**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-202077IPR016177DNA-binding domain
SMARTSM003802.2E-302083IPR001471AP2/ERF domain
PROSITE profilePS5103220.6262077IPR001471AP2/ERF domain
PfamPF008474.1E-102068IPR001471AP2/ERF domain
CDDcd000183.57E-292076No hitNo description
Gene3DG3DSA:3.30.730.108.9E-272076IPR001471AP2/ERF domain
PRINTSPR003671.4E-82132IPR001471AP2/ERF domain
PRINTSPR003671.4E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY  60
DVAARSISGS LATTNFFYTE NTSLKTQPQQ LLQSLGPDMT WGSSNVCLLH DQPSENIHFA  120
ADPISSSFAQ EQESSTNLTN TFSHCYDDDH VGQSKEISLP SLPNDMSNSL FSNQDKAGEH  180
DNADHLKIGS VLSDEPHCFE YDYIGNYLQS FLKDVNGDAP QFLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1816761071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.52989s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K230.0AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889976.11e-138ethylene-responsive transcription factor ERF088
SwissprotQ3E7031e-139ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLD7KPE01e-137D7KPE0_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.1__1396__AT1G12890.11e-138(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-118ERF family protein