PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.52989s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 46741.6 Da PI: 6.8991 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.3e-11 | 242 | 284 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L Araha.52989s0002.1.p 242 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRAAILGDAIDYLKEL 284 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.555 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-16 | 238 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-9 | 241 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-14 | 241 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 242 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.40E-12 | 242 | 288 | No hit | No description |
PROSITE profile | PS51671 | 8.734 | 350 | 422 | IPR002912 | ACT domain |
CDD | cd04873 | 7.71E-7 | 351 | 392 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0010444 | Biological Process | guard mother cell differentiation | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
DWFNNPPPPQ QHLHDSQILH NNNQTDFRFN GGFPLNPSEN LLLLLQQSID SSSSPLHPFT 60 LDAASQQQQE QSFLATKACI ASLLNVPTSN NNTFDEFGFD SGFLGQQFHG NQSPNSMSFA 120 GLNHSVPDFL TSRSIPAPEN SSGSCGLSPL FENRAKVLKP LEVLASSGSQ PTLFQKRAAM 180 RQSSSSKMCN SESSSEMRKS SYEREIDDTS TGIIDISGLN YESDEHINNK GKKKGMPAKN 240 LMAERRRRKK LNDRLYMLRS VVPKISKMDR AAILGDAIDY LKELLQRIND LHTELESTPP 300 SSSSLHPLTP TPQTLSYRVK EELCPSSSLP SPKGQQPRVE VRLREGKAVN IHMFCGRRPG 360 LLLSTMRALD NLGLDVQQAV ISCFNGFALD VFRAEQCQED HDVLPEQIKA VLLDTAGYAG 420 LV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 249 | KKKGMPAKNLMAERRRRKK |
2 | 243 | 250 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.52989s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118011 | 0.0 | AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13. | |||
GenBank | BT005377 | 0.0 | BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds. | |||
GenBank | EU369670 | 0.0 | EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889974.1 | 0.0 | transcription factor SCREAM2 | ||||
Swissprot | Q9LPW3 | 0.0 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | D7KPD7 | 0.0 | D7KPD7_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_1326 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1952 | 27 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.52989s0002.1.p |