PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5131s0009.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 290aa MW: 33806 Da PI: 10.2449

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5131s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	232	254	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F ++ + H+ +H Araha.5131s0009.1.p 232 YTCPKCNGVFDTSQKFAAHMLSH 254 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0086	232	254	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.411	232	259	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	234	254	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSYIPNRFNI DGGDTTNHRE SLPIEMNHNS KMVHSMFITS DRMNHRDSFS SPPSFSSYQN 60 SHVSSSYVGF NNSHMTKRNI DSISRANYFP TKDKYHFTQV SFTQTIINRY TTIVPSDLFN 120 NVHYDIERVK RAMDSTNTWN PISHLPKFLD NQSGILKPTP LNIVFPHQDF ADRQHLDMVS 180 LPSKYNRVSQ AGRSLKTIPK PTNIFEKITS YIDDDHYDGR THSLPYKKFG PYTCPKCNGV 240 FDTSQKFAAH MLSHYNSETN KERDQRLRAR NKKRYRKFME SLKRSKQKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	ESLKRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5131s0009.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865500.2	1e-168	LOW QUALITY PROTEIN: uncharacterized protein LOC9299832
TrEMBL	D7MS14	0.0	D7MS14_ARALL; Uncharacterized protein
STRING	scaffold_800878.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42640.1	1e-149	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Araha.5131s0009.1.p