PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5101s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 315aa    MW: 35244.5 Da    PI: 8.7986
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5101s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.92.2e-3286140459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          ++YkeClkNhAa++Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHRre e 
  Araha.5101s0010.1.p  86 IKYKECLKNHAATMGGNAIDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRREIEG 140
                          79*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2686141IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-2986138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3187138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73588137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.07E-20212284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-31217285IPR009057Homeodomain-like
PROSITE profilePS500718.973221285IPR001356Homeobox domain
TIGRFAMsTIGR015654.7E-26223279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEIASQEDPI PINTSYDNSG GRHGNMIHHH ANSAPSSLNM TTSNPLLVSS NGNGLGKNHD  60
HSHHHHVGYN IMVSNNNIKK EKPVVIKYKE CLKNHAATMG GNAIDGCGEF MPSGEEGSIE  120
ALTCSACNCH RNFHRREIEG EEKTFSFSYL NHHQPPPPQR KLMFHHKMIK SPLPQQMIMP  180
VGVTTAGSNS ESEDLMEEDG GGSLTFRQPP PPPPPYSYGH NQKKRFRTKF TREQKEKMMS  240
FAERVGWKIQ RQEESVVQQL CQEIGIRRRV LKVWMHNNKH NLSKKSNNNN VNNNVELSAG  300
NNNATTENLA STNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-232232811775ZF-HD homeobox family protein
1wh7_A7e-232242811875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5101s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0041360.0AC004136.3 Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete sequence.
GenBankAY7738340.0AY773834.1 Arabidopsis thaliana clone pENTR221-At2g02540 hypothetical protein (At2g02540) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881091.10.0zinc-finger homeodomain protein 3
SwissprotO647220.0ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLD7LQ450.0D7LQ45_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__158__AT2G02540.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-169homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]