PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4996s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 996aa MW: 110130 Da PI: 5.0631 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.8e-18 | 35 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Araha.4996s0012.1.p 35 KGQWTPEEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 62.1 | 1.2e-19 | 87 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ++d+v+++G++ W+tI+++++ gR +kqc++rw+++l Araha.4996s0012.1.p 87 KGPWSKEEDNTIIDLVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHL 133 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.9 | 8.6e-17 | 139 | 181 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE++ l++a++ +G++ W+ ++ ++ gR+++++k++w+ Araha.4996s0012.1.p 139 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.523 | 30 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 35 | 81 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.51E-15 | 36 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 36 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-13 | 38 | 81 | No hit | No description |
PROSITE profile | PS51294 | 32.58 | 82 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 84 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-18 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-18 | 87 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.93E-16 | 89 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-27 | 94 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.286 | 138 | 188 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-15 | 138 | 186 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 139 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-11 | 141 | 181 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 141 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 996 aa Download sequence Send to blast |
MKREMKAPNT PQESLQVDLK GKQGRTSGPA RRSTKGQWTP EEDEVLCKAV ERFQGKNWKK 60 IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIID LVEKYGPKKW STISQHLPGR 120 IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW 180 NSSVKKKLDS YYASGLLDQC QSSPLIALQN KSIASSSSWM HSSGDEGNSR PGVDAEESEC 240 SQASTVFSQS TNDLQDEVKP GNEEYYIPEF HSGTEQQISN AASHAELYYP SSEDVKIVVP 300 EISCEAECSK KIQNRNCSHE VRTTTAVEDQ LQGVSNDAKQ DLALDLLTHN MDNYGKNQAL 360 QQAFQSSVRL SDQPSLPNSD TDPEAQTLIT DEECCRVLFP DTVKDSSISS CEQGRNMVDL 420 QKGIGSLCSQ AAETQAHETG KPTALSWHPS SSEGLAGHNC VPLLNSDLKD SLILCNDSNA 480 PIQGCHLFGA TELERKTDTN DGFIDTDGHV TSHGNDDNDG IPEQQGLSYI PKDSLKLVPL 540 NSFSSPSRVN KIYFPIDDKP AEKDKGALCY EPPRFPSADI PFFSCDLVPS NSDLRQEYSP 600 FGIRQLMISS MNCTTPLRLW DSPCHDRSPD VMLNDAAKNF SGAPSILKKR HRDLLSPVLD 660 RRKEKKIKRA ATSSLANDFS RLDVMLDEGG DCMSSRLSES PENENRCASP SKAKDNRNSA 720 SGRSDQEMIP IDEEPKETLE SGGVTSMQNE KGCNDGDASA KNDQETSGSF VEIRLCSPGM 780 TLSRPDNKVN TSAEDLSNQH KRSLGDIPTE GISSEPSCTV DSIPLSEIDK TNTAETSFDI 840 ENFNIFDGTP FRKLLDTPSP WKSPLLFGTF LQSPKLPPEI TFEDIGCFMS PGEKSYDAIG 900 LMKHLSEHSA TAYADALEVL GNDTPETILK KRQLNKSIQG KENQHQPHDQ LGNRSQVECR 960 TLDFSDCGTP GKATVPSASP GGYSSPSSYL LKSCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-67 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-67 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4996s0012.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF151646 | 0.0 | AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds. | |||
GenBank | AF176005 | 0.0 | AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872494.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_020872495.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_020872496.1 | 0.0 | transcription factor MYB3R-1 | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | D7M9P9 | 0.0 | D7M9P9_ARALL; PC-MYB1 | ||||
STRING | fgenesh2_kg.7__866__AT4G32730.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.4996s0012.1.p |
Publications ? help Back to Top | |||
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