PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.48233s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 134aa MW: 15572.3 Da PI: 4.3616 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.3 | 6.7e-19 | 9 | 98 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk + + +s+ l +p f e++ + + t+ l d +grsW+v++ +k+++ ++lt GW++Fvk+n+L++g + F +d++++f Araha.48233s0001.1.p 9 FFKPF--ISQKSSKSLAIPLGFEEHFP--APLPLTVDLLDYNGRSWTVRV--KKRGENVFLTVGWENFVKDNNLEDGKHLNFIYDRQRTF- 92 78888..455556669******65555..44899****************..*******************************9986666. PP .EEEEE- CS B3 92 lvvkvfr 98 +v +f Araha.48233s0001.1.p 93 -YVIIFG 98 .888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-24 | 4 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-22 | 6 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.508 | 7 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-17 | 9 | 97 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-20 | 9 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MADTGEVRFF KPFISQKSSK SLAIPLGFEE HFPAPLPLTV DLLDYNGRSW TVRVKKRGEN 60 VFLTVGWENF VKDNNLEDGK HLNFIYDRQR TFYVIIFGHD MCSEFRSFPQ VVVEVDDYEN 120 GEEVDEEEQE NNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-62 | 1 | 102 | 3 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.48233s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493460 | 1e-130 | AB493460.1 Arabidopsis thaliana At1g16640 mRNA for hypothetical protein, partial cds, clone: RAAt1g16640. | |||
GenBank | BT012511 | 1e-130 | BT012511.1 Arabidopsis thaliana At1g16640 gene, complete cds. | |||
GenBank | BT014811 | 1e-130 | BT014811.1 Arabidopsis thaliana At1g16640 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890178.1 | 8e-86 | B3 domain-containing protein At1g16640 | ||||
Swissprot | Q9FX77 | 1e-69 | Y1664_ARATH; B3 domain-containing protein At1g16640 | ||||
TrEMBL | D7KEH6 | 2e-84 | D7KEH6_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh1_pm.C_scaffold_1001418 | 3e-85 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15751 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 3e-69 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.48233s0001.1.p |
Publications ? help Back to Top | |||
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