PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4815s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 302aa    MW: 34700.8 Da    PI: 10.251
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4815s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-1919113199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k l++ d+++++   +p +f+++++ + e s  ++++ ++g+sW+vk+  +k+++  ++ ++GW+ Fv++n L + +f++F+++g+++
  Araha.4815s0004.1.p  19 FVKLLKHFDMSSENTRAIPYDFVRNFSDN-ELSGNMKIRVQWGNSWKVKI--SKNPRFyFMEKSGWETFVRDNALGDYEFLTFTHKGKMS 105
                          8999999****************887655.5777****************..******555569*********************99999 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v +f+k
  Araha.4815s0004.1.p 106 F--TVNIFNK 113
                          9..9999976 PP
2B341.23e-132212911487
                          T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          + l +p +f ++++ k  e++++++ +++g +sW+v +    k++++++++GWk+ +++  +  gD++ F+l++ 
  Araha.4815s0004.1.p 221 KSLAIPTTFSNDYMPK--EKTMVKIHHPDGkKSWNVVF--VVKKKGHIFSGGWKRLCREYPVVFGDTCKFTLIKP 291
                          3489*****9888744..5679*******999******..888888*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2015120IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-1918112No hitNo description
PfamPF023621.9E-1819113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.60619114IPR003340B3 DNA binding domain
SMARTSM010193.6E-2219114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-18205298IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955208301IPR003340B3 DNA binding domain
SMARTSM010192.0E-14211301IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-15213297IPR015300DNA-binding pseudobarrel domain
CDDcd100174.26E-9218297No hitNo description
PfamPF023621.2E-10219293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASNPDFLWC KEERKQESFV KLLKHFDMSS ENTRAIPYDF VRNFSDNELS GNMKIRVQWG  60
NSWKVKISKN PRFYFMEKSG WETFVRDNAL GDYEFLTFTH KGKMSFTVNI FNKDGKEMMQ  120
PPQSRAFLAS SSRIKTEQDV KREEVLVSSD SSSRGPTTAA VSNGNGEGMY KRKLNFGKKK  180
AEETQNSKRT ERVVSMERVY AGEPSSSVAE FNIFISKSYI KSLAIPTTFS NDYMPKEKTM  240
VKIHHPDGKK SWNVVFVVKK KGHIFSGGWK RLCREYPVVF GDTCKFTLIK PYELLLVVSK  300
P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4815s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566750.0DQ056675.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g09780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873422.10.0B3 domain-containing protein REM23
SwissprotQ9LXE11e-178REM23_ARATH; B3 domain-containing protein REM23
TrEMBLD7M2720.0D7M272_ARALL; Predicted protein
STRINGAl_scaffold_0006_8790.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.11e-180B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]