PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4808s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 288aa MW: 32592.3 Da PI: 10.0922 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.5 | 3.8e-21 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrse 89 ffkvl + dv+++++ lp +f+ ++ +ke s++++++ ++g sWev + +k+++ y+l+ +GW +Fv++n L ++f++F+++g+++ Araha.4808s0002.1.p 19 FFKVLRSLDVSSENLRALPHDFV-RCFTDKELSRKMKIRAQWGSSWEVAI--SKNPRFYYLEkSGWGKFVRDNALGNNEFITFTHKGKMR 105 99*********************.666678899*****************..******777759********************999999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v +f++ Araha.4808s0002.1.p 106 F--TVNIFKQ 113 9..9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-21 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-21 | 14 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.27E-18 | 17 | 112 | No hit | No description |
SMART | SM01019 | 6.8E-22 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-19 | 19 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.944 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.29E-14 | 186 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-11 | 186 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.629 | 190 | 283 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-12 | 193 | 283 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.89E-7 | 207 | 282 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAINPDYLRC KEERTNKSFF KVLRSLDVSS ENLRALPHDF VRCFTDKELS RKMKIRAQWG 60 SSWEVAISKN PRFYYLEKSG WGKFVRDNAL GNNEFITFTH KGKMRFTVNI FKQDGKEMMQ 120 PPQSSSFLAS SSRGIKTEQR EDDKKEEVVV SSELSPTTAA ESNGGTSKRN LNLGKKKARG 180 DSAGASSSSV AEFTIFIRRS YLRILPIPTA FDKAYMPKKN AMFKIHHPDG KRSWNVTYLA 240 STTVGFSAGW ICLIKEYPIA AGDTCKFTLI KPDELLLVVL RPEEETE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4808s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887801.1 | 1e-157 | B3 domain-containing protein At2g16210 | ||||
Swissprot | Q5BPT7 | 1e-124 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | D7L4F0 | 1e-145 | D7L4F0_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_3435 | 1e-146 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.1 | 1e-115 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.4808s0002.1.p |
Publications ? help Back to Top | |||
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