PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4788s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 581aa    MW: 64885.4 Da    PI: 6.5209
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4788s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.71.1e-22185238155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k++++Wt  LH+ F++a++++ G +kA+Pk+il +m+v  Lt+e+v+SHLQkYR+
  Araha.4788s0002.1.p 185 KKKIEWTDSLHDLFLQAIRHI-GLDKAVPKKILAFMNVSYLTRENVASHLQKYRI 238
                          6899*****************.********************************6 PP
2Response_reg60.49.7e-2148925110
                          EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHHH CS
         Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvka 110
                           v ++dd+++al +lk ++  +Dli++D  mp+m+Gl+l k+i++e  +lp++v++  ++++  +e l+ Ga++f+ Kp++p++l+k 
  Araha.4788s0002.1.p   4 TVIAVDDPKKALSTLKIQRdnIDLIITDYYMPNMNGLQLKKQITQEFGNLPVLVMS--SDPNKEQESLSCGAMGFIPKPIEPADLTKI 89 
                          56689*********9555555************************99*********..5667899********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.482194IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521725.12E-193101IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-193116No hitNo description
CDDcd001561.14E-18394No hitNo description
PfamPF000727.0E-17490IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.237182241IPR017930Myb domain
SuperFamilySSF466896.09E-17183242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-23184242IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25185238IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MKITVIAVDD PKKALSTLKI QRDNIDLIIT DYYMPNMNGL QLKKQITQEF GNLPVLVMSS  60
DPNKEQESLS CGAMGFIPKP IEPADLTKIY QFALTYKRNG KSTLSTEQNH KDADVSVPQQ  120
ITLIPEQADV LKTKKKNCSS KSDSRTVNST NGSCVSTDGS KKNRKRKPNG GPSDDGESLL  180
QPAKKKKIEW TDSLHDLFLQ AIRHIGLDKA VPKKILAFMN VSYLTRENVA SHLQKYRIFL  240
RRVADQGMSS MLSDRGIDSM FRQTHIKEPY FNCYTPFTSW YDTSLNNRSF YSKPGHGLGQ  300
SRLLSKTREP VRFNQMPYNY MNRSSTYEPH HIGSGSNLTL PIQSNLSFPN QPSHNKDIRS  360
FFEPSAVMAN KIVQTAQVLG FGQLGPSTIS GNNFNNNMMS SYGSLTPNQP GSSHFSYGMQ  420
SFLNNENAAS NPQPPANATT QPNLAELPQL ENLNLYNDLG NTSDLPYNIS NFQFDDNKQQ  480
QGEADSTKFD LPANSSTELN QILSLEDNGD RTFVNINQGQ SNGETSNTIA APEINPPIFN  540
MSPNQNQGQD VPEFTDWSFL DPQELVDDDF MNSLFNNDMN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-19184244464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164186KRKPNGGPSDDGESLLQPAKKKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4788s0002.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1636520.0AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871257.10.0putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLD7M0G70.0D7M0G7_ARALL; Two-component response regulator
STRINGfgenesh1_pm.C_scaffold_60005570.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21