PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.47453s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 197aa    MW: 22564.9 Da    PI: 7.7949
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.47453s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC147.52.8e-4634131298
                 NF-YC   2 lksfwekqiekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                           lk+fw++q+e+  +f+ ++ lPl+r++kilk++++vk+is+++P+l+skace+file+tlr+w+++++++r+t++++di++av++++++
  Araha.47453s0001.1.p  34 LKVFWNNQREQLGNFAgQTYLPLSRVRKILKSNPEVKKISCDVPALFSKACEYFILEVTLRAWMNTQSCTRQTIRRCDIFQAVKNSETY 122
                           99*************98999********************************************************************* PP

                 NF-YC  90 dflvdivpr 98 
                           dfl+d+vp 
  Araha.47453s0001.1.p 123 DFLIDRVPF 131
                           *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-2442150IPR009072Histone-fold
PfamPF008084.9E-1553116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-2654130IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MRRPKSSRIR MEPVRSNHPP PSKNEGTSSL DTALKVFWNN QREQLGNFAG QTYLPLSRVR  60
KILKSNPEVK KISCDVPALF SKACEYFILE VTLRAWMNTQ SCTRQTIRRC DIFQAVKNSE  120
TYDFLIDRVP FGPHCVVHQG VPTPAEMILP DMNVPIDMDQ IEQENLTEEC SINNRGFDLN  180
SDLQVVFFEL LFLKSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-235413042118HapE
4g92_C1e-235413042118HapE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.47453s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937680.0AB493768.1 Arabidopsis thaliana At5g38140 mRNA for hypothetical protein, partial cds, clone: RAAt5g38140.
GenBankBT0219190.0BT021919.1 Arabidopsis thaliana At5g38140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874803.11e-131nuclear transcription factor Y subunit C-10
SwissprotQ58CM81e-113NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBLD7MK401e-137D7MK40_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__3596__AT5G38140.11e-138(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.11e-115nuclear factor Y, subunit C12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]