PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.47358s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 185aa MW: 20500.9 Da PI: 9.6721 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.1 | 1.2e-28 | 13 | 147 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.. 88 ++++ +++h k ggRdRR+R++ ++a ++F+L++eLGf++d++t+ WLl++a+pai ++tg s++++ + ++s s+s++ + Araha.47358s0002.1.p 13 ATRTPKDRHVKIGGRDRRIRIPPSIAPQVFKLTKELGFKTDGETVGWLLRNAEPAIFAATGHgvSTTPSDVSVTHSYSNSQNYT--Ncg 99 56778*********************************************************7644444233333333333312..133 PP TCP 89 ...............................................k 89 + Araha.47358s0002.1.p 100 nnltinggqiscvnnnffrysitntghhemvfpgatiteygassilpA 147 455566667777777777777777777777777777777777766652 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-25 | 17 | 146 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.37 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MDSRNEINNR QKATRTPKDR HVKIGGRDRR IRIPPSIAPQ VFKLTKELGF KTDGETVGWL 60 LRNAEPAIFA ATGHGVSTTP SDVSVTHSYS NSQNYTNCGN NLTINGGQIS CVNNNFFRYS 120 ITNTGHHEMV FPGATITEYG ASSILPAKDK EGVSSQNQKQ QQPQFELGKV EMVADEKTYV 180 WRKE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00390 | DAP | Transfer from AT3G45150 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.47358s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL138649 | 2e-74 | AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3. | |||
GenBank | CP002686 | 2e-74 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002875715.1 | 6e-89 | transcription factor TCP16 | ||||
Swissprot | Q9M1U4 | 1e-54 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | D7LNL8 | 1e-87 | D7LNL8_ARALL; Uncharacterized protein | ||||
STRING | scaffold_501366.1 | 2e-88 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G45150.1 | 2e-43 | TCP domain protein 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.47358s0002.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|