PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4706s0012.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 371aa    MW: 40664.9 Da    PI: 6.2349
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4706s0012.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.6e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         +C+ ++e++   +C+++  +lC +C  + H+       H++
  Araha.4706s0012.2.p  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                         6*****************************65677777765 PP
2zf-B_box231.6e-074695438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...............Ht 38
                          +C++++ ++++  C + ++ lC++C  ++H++               H+
  Araha.4706s0012.2.p 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHSNtnnnnssssstspqqHK 95
                         68*****************************7756666666666666665 PP
3CCT60.46.1e-21313356144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Araha.4706s0012.2.p 313 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 356
                          99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
CDDcd000211.00E-7447No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8594387IPR000315B-box-type zinc finger
CDDcd000211.99E-54776No hitNo description
SMARTSM003364.64899IPR000315B-box-type zinc finger
PROSITE profilePS5101715.338313355IPR010402CCT domain
PfamPF062031.0E-15313355IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHSNTN NNNSSSSSTS PQQHKRQTIS CYSGCPSSSE LASIWSFCLD  120
LAGQSICEQE MGMMNIDDDG PTDNKNCNED KKDVFVSIPE TSSAAQGKSS SAKDVGVCED  180
DFYGNLSMDE VDMALENYEE LFGVAFNPSE ELFGHGGIDS LFQKHQTKAP EGGNSVHPAG  240
SNDSFMSSKT EPIICYTSKP AHSNISFSGV TGESSAGDFQ ECGASSSIQL SGEPPWYPPT  300
SQENNACSHS VTRNNAVMRY KEKKKARKFD KRVRYASRKA RADVRRRVKG RFVKAGEAYD  360
YDPLTPTRSY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4706s0012.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3169340.0AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23.
GenBankBT0294900.0BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886391.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_020886392.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLD7L6N10.0D7L6N1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__796__AT3G07650.30.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9