PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4706s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 355aa    MW: 39356.7 Da    PI: 5.3875
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4706s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.75.5e-3172162398
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++rlws++De+v+L+G+++++++tg+++ +d  af++ +k+ i++kvsk+ql+ Kir+LK Kf+++ +k     +psf++++d+++f+ls
  Araha.4706s0006.1.p  72 SKRLWSKDDELVILKGIVEYRDETGVDYLSDSAAFFDHIKDAIDAKVSKDQLMRKIRKLKTKFRDNLAK-----KPSFTSSQDSEAFDLS 156
                          79*****************************************************************99.....9*************** PP

               DUF573  93 kkiWgs 98 
                          + iWg+
  Araha.4706s0006.1.p 157 MAIWGK 162
                          ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-2573161IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVNKKRLSSK DDFSDTYTCD LEFRINNSNG FLPPDSPEKL DSSHAAFDAA EETPSMLMKS  60
RKKRKATHAS DSKRLWSKDD ELVILKGIVE YRDETGVDYL SDSAAFFDHI KDAIDAKVSK  120
DQLMRKIRKL KTKFRDNLAK KPSFTSSQDS EAFDLSMAIW GKHKSGCVDG SNDKPKGAKS  180
KVLASVEHEV VTNGEPENDD GSAKGDSFDK LPSENVDKTI EIETGGKESE VVEAVTNGEP  240
ENHDGSAKKG DSCDDKLPSD NVDKHMENEG NGKESEEDGA ADELFALQDA LETTLFQHLG  300
KYAQKQMLEK LWSLRAKERK ELSGEWKSLL AQEALLKSKK HSFSAKLANA TFHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4706s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0091761e-165AC009176.5 Arabidopsis thaliana chromosome III P1 MLP3 genomic sequence, complete sequence.
GenBankATAC0134831e-165AC013483.7 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence, complete sequence.
GenBankCP0026861e-165CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641576.11e-164GLABROUS1 enhancer-binding protein-like 1
TrEMBLD7L7071e-108D7L707_ARALL; Uncharacterized protein
STRINGBostr.22252s0256.1.p1e-171(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.18e-39DNA-binding storekeeper protein-related transcriptional regulator