PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4703s0002.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family EIL
Protein Properties Length: 516aa    MW: 59059.8 Da    PI: 6.5722
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4703s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3399.44.7e-122424021354
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          eel+k+ w+d+++lkrlke+ ++ ++++   + ++ +++  e++++++m +aQDgiLkYM k+me c+aqGfvYgi+ e+gk+v g+sd+
  Araha.4703s0002.2.p  42 EELEKKIWRDKQRLKRLKEMARNGVGKRL--MLKQHHDDFPEHSSKRTMYKAQDGILKYMSKTMERCKAQGFVYGIVLENGKTVAGSSDN 129
                          8**********************996666..5777899**************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          Lr+WWk+kv+fdrngpaai+k+q + ++++g++  +  ++ + h+l elqDTtlg+LLsal  hc+ppqrrfplekgv+pPWWPtG+e+w
  Araha.4703s0002.2.p 130 LREWWKDKVRFDRNGPAAIIKHQRDINLSDGSDLGSEVGECTTHKLLELQDTTLGALLSALLPHCKPPQRRFPLEKGVTPPWWPTGQEDW 219
                          ************************99999998888777999************************************************* PP

                          HHHHT--TT--...-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX... CS
                 EIN3 181 wgelglskdqg..tppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss... 265
                          w++l+l++d +  +ppykkphdlkk wk++vL  vi+hm+ +i++i +l+r+s++lq+km+++e + +l+ ln+e+++++++  + +   
  Araha.4703s0002.2.p 220 WDQLSLPEDFRglPPPYKKPHDLKKLWKIGVLIGVIRHMASDISNIPNLVRRSRSLQEKMTSREGALWLAALNREKAIVDQIAFSREnnn 309
                          **********************************************************************************99933357 PP

                          ......XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXX CS
                 EIN3 266 ......slrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsi 349
                                  +++++++ + +++++dve+       + q  + ++++++v krk  ++e+  +s + +  tc++s +++s+++++f+d+n +
  Araha.4703s0002.2.p 310 tcnflvPATSGDTNLLFPESANYDVEVIGGFYRINQQYPEFENNYNCVYKRK--FEEDFGISMQPILLTCENSLCPYSQPHMGFHDRNLR 397
                          89888766779***************544444445666777789*******9..677777777889************************ PP

                          XXXXX CS
                 EIN3 350 sqney 354
                          +++++
  Araha.4703s0002.2.p 398 ENHQM 402
                          ***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.9E-11642295No hitNo description
Gene3DG3DSA:1.10.3180.101.4E-60168303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.35E-53172298IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MDLYNNNRGM FRGLVCSPVP PFTEGHAATC DDLSSDEEME IEELEKKIWR DKQRLKRLKE  60
MARNGVGKRL MLKQHHDDFP EHSSKRTMYK AQDGILKYMS KTMERCKAQG FVYGIVLENG  120
KTVAGSSDNL REWWKDKVRF DRNGPAAIIK HQRDINLSDG SDLGSEVGEC TTHKLLELQD  180
TTLGALLSAL LPHCKPPQRR FPLEKGVTPP WWPTGQEDWW DQLSLPEDFR GLPPPYKKPH  240
DLKKLWKIGV LIGVIRHMAS DISNIPNLVR RSRSLQEKMT SREGALWLAA LNREKAIVDQ  300
IAFSRENNNT CNFLVPATSG DTNLLFPESA NYDVEVIGGF YRINQQYPEF ENNYNCVYKR  360
KFEEDFGISM QPILLTCENS LCPYSQPHMG FHDRNLRENH QMTCPYKVTS FYQPTKPYGM  420
AGLMVPCPDY NRMQQQVQSI QDQFNHPNNL YRPKAPQTGS NNDDLVEDLS PSPSTLNQNL  480
GLVLPTDFNG DVETVGMENN NLQNQEQVLS TSWIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-531713012130Protein ETHYLENE INSENSITIVE 3
4zds_B2e-531713012130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4703s0002.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693250.0AC069325.6 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence.
GenBankAC1409770.0AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAF0042140.0AF004214.1 Arabidopsis thaliana ethylene-insensitive3-like2 (EIL2) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876260.10.0ETHYLENE INSENSITIVE 3-like 2 protein isoform X2
SwissprotO231150.0EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLD7M0Q30.0D7M0Q3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60017990.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.10.0ETHYLENE-INSENSITIVE3-like 2