PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4583s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 224aa MW: 25464 Da PI: 4.7073 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 28 | 68 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++ Araha.4583s0001.1.p 28 SHDEEQLVIDLHAHLGNK-WSKIASRLP-GRTDNEIKNHWNTH 68 789***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.379 | 1 | 18 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 4 | 17 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-20 | 5 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 18 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.371 | 19 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-14 | 23 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.71E-11 | 28 | 69 | No hit | No description |
Pfam | PF00249 | 9.2E-15 | 28 | 68 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
AGLRRCGKSC RLRWTNYLRP DLKRGLLSHD EEQLVIDLHA HLGNKWSKIA SRLPGRTDNE 60 IKNHWNTHIK KKLLKMGIDP MTHQPLNQEH SNIDNSKTIL SNPEDITMEP KTTNTKDVEI 120 SATTAEDESS STVTDQNNSM DSENHLIDNI YNDDELFSYL WSDETTKAEA SWSDSNFGVG 180 GTLFDNNITG GDADYPIWSP ERINDEKMFL DYCQDFGVHD FGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 5 | 73 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4583s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175993 | 0.0 | AF175993.2 Arabidopsis thaliana putative transcription factor (MYB85) mRNA, complete cds. | |||
GenBank | AK175718 | 0.0 | AK175718.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-25-P15. | |||
GenBank | AK175777 | 0.0 | AK175777.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-35-I17. | |||
GenBank | AY519608 | 0.0 | AY519608.1 Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA, complete cds. | |||
GenBank | DQ446863 | 0.0 | DQ446863.1 Arabidopsis thaliana clone pENTR221-At4g22680 myb family transcription factor (At4g22680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020873672.1 | 1e-145 | protein ODORANT1 | ||||
TrEMBL | D7ME18 | 1e-144 | D7ME18_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__2034__AT4G22680.1 | 1e-145 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22680.1 | 1e-141 | myb domain protein 85 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4583s0001.1.p |