PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.4581s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 415aa MW: 46443.7 Da PI: 5.7857 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 232 | 286 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++++gLt++hvkSHLQkYR+ Araha.4581s0001.1.p 232 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNIPGLTIYHVKSHLQKYRT 286 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.943 | 229 | 289 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-17 | 230 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 230 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-23 | 232 | 286 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.0E-11 | 234 | 285 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.0E-22 | 320 | 366 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MTLANDFGYS TAMSSSFSAL HTTVEDRYRK LPNSFWVSSG QELMNNPVPC QSVSGGNSGG 60 YLFPSPSGFC NVSAVSPHGR NSQNQPPLST VPRERLAMQD CPLEAQPPLL INHHHQEFTD 120 PLPEFFDFSD HVPVQNLQAE SSGVRVDSSV ELHKKSEWQE WADQLISVDD GSEPNWSELL 180 GDSSSHNPNS EIPTPFLDVQ RQEIKANQQQ QVVSSEDQLS GKNSSSSVAT SKQRMRWTPE 240 LHEAFVEAVN QLGGSERATP KAVLKLLNIP GLTIYHVKSH LQKYRTARYK PDTSEVTGEP 300 QEKKMTSIED IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRSLQLQI EKQGRYLQMM 360 FEKQQKIQEN KSSSPEASPK QCNGTSAEVE VGLETRTVNQ NEPASASRKR VRED* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-29 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.4581s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020877765.1 | 0.0 | protein PHR1-LIKE 1 isoform X1 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | D7M706 | 0.0 | D7M706_ARALL; Myb family transcription factor | ||||
STRING | fgenesh2_kg.6__2806__AT5G29000.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G29000.2 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.4581s0001.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|