PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4538s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 11021.2 Da PI: 9.6331 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.8e-09 | 12 | 57 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+WT+ + + +a + + + +W +a+ +g g+t +++k ++ Araha.4538s0007.1.p 12 GSWTAKQNKAFEQALATYDQDtpnRWQNVAKVVG-GKTTEEVKRHYE 57 89*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.961 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-7 | 12 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.93E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.82E-7 | 14 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MASSSMSSHS SGSWTAKQNK AFEQALATYD QDTPNRWQNV AKVVGGKTTE EVKRHYELLV 60 QDINNIENGH VPFPNYRTSG GCTNGREEKR MRNMRMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-37 | 7 | 97 | 3 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4538s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL050351 | 1e-125 | AL050351.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project). | |||
GenBank | AL161594 | 1e-125 | AL161594.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90. | |||
GenBank | AY519527 | 1e-125 | AY519527.1 Arabidopsis thaliana MYB transcription factor (At4g39250) mRNA, complete cds. | |||
GenBank | BT024650 | 1e-125 | BT024650.1 Arabidopsis thaliana unknown protein (At4g39250) mRNA, complete cds. | |||
GenBank | CP002687 | 1e-125 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002868895.1 | 1e-57 | protein RADIALIS-like 1 | ||||
Refseq | XP_010437040.1 | 1e-57 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 5e-58 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | D7MGD1 | 3e-56 | D7MGD1_ARALL; DNA binding protein | ||||
STRING | scaffold_700126.1 | 4e-57 | (Arabidopsis lyrata) | ||||
STRING | XP_010437040.1 | 5e-57 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-59 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4538s0007.1.p |
Publications ? help Back to Top | |||
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