PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4530s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 434aa    MW: 49076.6 Da    PI: 4.8783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4530s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-11221264654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  Araha.4530s0002.1.p 221 FTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 264
                          578*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.69E-11213269No hitNo description
PROSITE profilePS5088814.056215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-11215273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13215281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8219264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-9221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MYEESSCFDP NPMVDNNSGF CAAETTFPVS HQFQLPVGST TNSFNDDLKL PTMEEFSVFP  60
SVISLPNSET QNQNINNNNH LINQMIQESN WGVSEDNSGF FMNTSHPNTT TTPIPDLLSL  120
LHLPRCSMSL PSSNLSDIMA GSCFTYDPLC HLNLPPQPPL IPSNDYSGYL LGIDTNTTTT  180
TQRDESNVGD ENNNAQFDSG IIEFSKEIRR KGRGKQKNKP FTTERERRCH LNERYEALKL  240
LIPNPSKGDR ASILQDGIDY INELRRRVSE LKYLVERKIC GGRHKNNELE NNINKNNSND  300
HDNDEDDIDD ENMEKKPESD VIDQCSSNNS LRCSWLQRKS KVTEVDVRIV DDEVTIKVVQ  360
KKKINCLLHV SKVLDQLQLD LYHVAGGQIG EHYSFLFNTK IYEGSTIYAS AIANRVIEVV  420
DKHYMAALPI NNY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4530s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882931.10.0transcription factor bHLH91
RefseqXP_020882932.10.0transcription factor bHLH91
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLD7LD030.0D7LD03_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.4__1108__AT2G31210.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]