PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4507s0022.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 722aa    MW: 81057.5 Da    PI: 5.9961
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4507s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1796151156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++++e+lF++n++++ e+r +L+k+lgL+  qVk+WFqN+R++ k
  Araha.4507s0022.1.p  96 KKHNHRHTARQIQQMEALFKENPHLDDEKRLRLSKELGLSPLQVKFWFQNKRTQIK 151
                          5677899*********************************************9877 PP
2START1463.5e-462484731206
                          HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWd 73 
                          ela ++aqel k+ + +ep+W+k +       +n++e+                     ++ ea+ra +v  m++ +lv+ +ld   +W+
  Araha.4507s0022.1.p 248 ELAVSCAQELEKMCDINEPLWSKKRlyndsVCLNEEEYK-------KiffwppmtdddrFRREASRANAVIMMNCITLVKAFLDAD-KWS 329
                          57899********************55554445555555.......33556677888889**************************.*** PP

                          TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSE CS
                START  74 etla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpS 150
                          e++     +a+t++ issg     g+l lm+aelq+ splvp R+ +f+Ry +q  ++g+w+ivd  +d  ++ +   + ++ R    pS
  Araha.4507s0022.1.p 330 EMFCpivsSAKTIQIISSGasgpsGTLLLMFAELQVVSPLVPtREAYFLRYVEQnAEEGKWMIVDFPIDRIKPASAtlTDQYRR---KPS 416
                          ***999**************************************************************9988888666777777...*** PP

                          EEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 151 giliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          g++i+ + ng+s+vtwvehv+++++l+ ++++r  vksg+a+ga +w+a l+rqce+
  Araha.4507s0022.1.p 417 GCIIQAMRNGYSQVTWVEHVEVEEKLVqDEVVREYVKSGVAFGAERWLAVLKRQCER 473
                          ***************************99**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1880154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-1880155IPR009057Homeodomain-like
PROSITE profilePS5007116.13193153IPR001356Homeobox domain
SMARTSM003897.7E-1595157IPR001356Homeobox domain
CDDcd000863.48E-1696154No hitNo description
PfamPF000463.8E-1596151IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084841.143239476IPR002913START domain
SuperFamilySSF559615.05E-29240475No hitNo description
CDDcd088752.12E-103243472No hitNo description
SMARTSM002345.2E-30248473IPR002913START domain
PfamPF018529.0E-39249473IPR002913START domain
SuperFamilySSF559611.21E-9493662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MYGDYQAMKS GEEEQGHVFL NSDNIFGSVS SSPTTTIQNP NYKFTSFDNP NFPYIFPKEE  60
YEMMSMIESG SGMSTWSGHD PVENTAIEQE PPPAKKKHNH RHTARQIQQM EALFKENPHL  120
DDEKRLRLSK ELGLSPLQVK FWFQNKRTQI KAQQTRRDNV MMKAENETLK TESQNLQSSL  180
QCLSCSSCGH NLRLENARLR RELDRLRSIV SMRNPPPAQE IACFSPEINN NNNYNMLIAE  240
EEKAIAMELA VSCAQELEKM CDINEPLWSK KRLYNDSVCL NEEEYKKIFF WPPMTDDDRF  300
RREASRANAV IMMNCITLVK AFLDADKWSE MFCPIVSSAK TIQIISSGAS GPSGTLLLMF  360
AELQVVSPLV PTREAYFLRY VEQNAEEGKW MIVDFPIDRI KPASATLTDQ YRRKPSGCII  420
QAMRNGYSQV TWVEHVEVEE KLVQDEVVRE YVKSGVAFGA ERWLAVLKRQ CERMASFMAT  480
NITDLGVIPS VEARKNLMKL SQRMVRTFCL NISNSYGQAS TKDTVRIVTR KVCGGLVPCA  540
VSVTLLPYSH HQVFDLLRDD QRLSQLEILF NRSSFQEVAH IANGSHPGNC ISLLQINVEG  600
NSSQNVELML QETCTDNSGS LLVYSTVEPD AVQLAMMNGE DPSKLPLLPV GFSVVPVNSS  660
SDGVEGISVN LPLCFLTVAI QVLGSNVTTA KLDLSTVSAI NNRICATVNR ITSALVNNVG  720
N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4507s0022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337000.0AY133700.1 Arabidopsis thaliana clone C103238 putative GLABRA2 protein (At4g17710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872468.10.0homeobox-leucine zipper protein HDG4
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLA0A178UX050.0A0A178UX05_ARATH; HDG4
STRINGBostr.30275s0233.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]