PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4425s0032.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 474aa    MW: 50034.5 Da    PI: 6.7295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4425s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125378227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +f+rtG C yG+rC+F+H++
  Araha.4425s0032.1.p 53 DEPDCIYFLRTGVCGYGSRCRFNHPR 78
                         6899********************96 PP
2zf-CCCH38.81.6e-1299124227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C++f+rtGtCk+G++Ck++H++
  Araha.4425s0032.1.p  99 GQPVCQHFMRTGTCKFGASCKYHHPR 124
                          5789********************96 PP
3zf-CCCH37.63.6e-12151175226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++f+rtG+Ck+G++C+++H+
  Araha.4425s0032.1.p 151 GEKECSYFMRTGQCKFGSTCRYHHP 175
                          7899********************9 PP
4zf-CCCH41.32.6e-13305330227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++C++f+rtG Ck+G++C+F+H++
  Araha.4425s0032.1.p 305 EQPECQYFMRTGDCKFGSSCRFHHPM 330
                          5799********************95 PP
5zf-CCCH33.76.1e-11352374426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C +fa+ G+Ck+G+ CkF H+
  Araha.4425s0032.1.p 352 VPCTHFAQHGICKFGPACKFDHS 374
                          79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1925179IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-55178IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-105378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-55778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27797125IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-697124IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1099124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5102124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394149177IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6149176IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10151175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4155174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798303331IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6303330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6304331IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10306330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389348376IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6348375IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8351374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5351376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4353374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MERYGGAGED ESRSDPSHEW SAPGTETGIE ASMWRLGLRG AEGGGESFPE RPDEPDCIYF  60
LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERMGQ PVCQHFMRTG TCKFGASCKY  120
HHPRQGGGGG GGGDSVTPVS LNYMGFPLRP GEKECSYFMR TGQCKFGSTC RYHHPVPPGV  180
QAPSQQQQQL SAGPTMYQSL QSQPVPSSQQ YGVVLARPQL LPGSYVQSPY GYGQMVLPPG  240
MVPYSGWNPY QASVSAIPSP GTQPSVGTSS VYGITPLSPS APAYQSGPSS TGVANKEQTF  300
PQRPEQPECQ YFMRTGDCKF GSSCRFHHPM EAASPEASTL SHIGLPLRPG AVPCTHFAQH  360
GICKFGPACK FDHSLGSSSL SYSPSPSSLT DMPVAPYPLE SSSLGTLAPS SSSDQRTELL  420
SSSSIEPITT TTGGSETVAA GVSSSSMTSG VSHPEPAETD KGDSASIEAK TSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4425s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2301750.0AK230175.1 Arabidopsis thaliana mRNA for zinc finger like protein, complete cds, clone: RAFL22-89-O03.
GenBankBT0108860.0BT010886.1 Arabidopsis thaliana At5g18550 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197356.20.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A178U7840.0A0A178U784_ARATH; Uncharacterized protein
STRINGAT5G18550.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]