PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4375s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27104.5 Da PI: 8.1909 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.8 | 2e-40 | 5 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t sgyWkat Araha.4375s0001.1.p 5 LPVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGSGYWKAT 94 79****************************999**************9656766667888****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++ Araha.4375s0001.1.p 95 GSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 136 ****************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-44 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.783 | 5 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-20 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEEELPVGFR FYPTEVELLT YYLRIQLGGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK 120 APTGRKTKWK MNEYKAVETN SISTIPKLRN EFSICRIYIK SGSSRAFDRR PTEAYAIERT 180 LPSHGVETSS RATLSTSPET SHSGGNQIDL PENVTTITQS ISEMVDGLSQ PFWEWEQMNW 240 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-35 | 5 | 165 | 20 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4375s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL138641 | 1e-118 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. | |||
GenBank | CP002686 | 1e-118 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001118771.1 | 1e-168 | NAC domain containing protein 61 | ||||
Swissprot | Q9M290 | 1e-156 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | B3H506 | 1e-167 | B3H506_ARATH; NAC domain containing protein 61 | ||||
STRING | AT3G44350.2 | 1e-168 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-161 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4375s0001.1.p |