PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4300s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | BES1 | ||||||||
Protein Properties | Length: 246aa MW: 26700.6 Da PI: 8.5826 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 217.3 | 3.5e-67 | 2 | 145 | 1 | 149 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg++++ e++e++g sa+as Araha.4300s0012.1.p 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCSRPvERMEIGGGSATAS 91 5899**********************************************************************999************* PP DUF822 90 pesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149 p+ss+q +sp++sy++sp ss+f+sp+s+++++l+s +sl+p+l++ls++sss Araha.4300s0012.1.p 92 PCSSYQ--------PSPCASYNPSPGSSNFMSPASSSFANLTSGdgQSLIPWLKHLSTTSSS 145 ******........**********************9999998788**********997776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.8E-64 | 3 | 140 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEPDGTTY RKGCSRPVER MEIGGGSATA SPCSSYQPSP CASYNPSPGS SNFMSPASSS 120 FANLTSGDGQ SLIPWLKHLS TTSSSSASSS SRLPNYLYIP GGSISAPVTP PLSSPTARTP 180 RMNADWQQLN NSFFVSSTPP SPTRQIIPDS ECNTNGLVKA WEGERIHEES GSDDLELTLG 240 NSSTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-23 | 6 | 74 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-23 | 6 | 74 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-23 | 6 | 74 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-23 | 6 | 74 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4300s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050430 | 0.0 | AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. | |||
GenBank | AY090331 | 0.0 | AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472705.1 | 1e-148 | PREDICTED: BES1/BZR1 homolog protein 4-like | ||||
Swissprot | Q9ZV88 | 1e-126 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A178WLH5 | 1e-150 | A0A178WLH5_ARATH; BEH4 | ||||
STRING | AT1G78700.1 | 1e-150 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1917 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-105 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4300s0012.1.p |