PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.42600s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21329.5 Da    PI: 9.6682
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.42600s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-25144750
                          HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          ++rqvtfskRr+g+ KKA+E+SvLCda+va+i+fs++gkl+eys
  Araha.42600s0001.1.p  1 IRRQVTFSKRRTGLVKKAQEISVLCDADVALIVFSPKGKLFEYS 44
                          59*****************************************8 PP
2K-box84.81.8e-28751581598
                 K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            ++++e +kL + i+ +qr++Rhl Ged++ Ls++eLq Le qL++++kk Rs+Kn+l++e+i +lqkkekel+e +k+L+kk 
  Araha.42600s0001.1.p  75 GECSTECSKLLRMIDVMQRSLRHLRGEDVDGLSIRELQGLEMQLDTAIKKTRSRKNQLMVESIAQLQKKEKELKELKKQLTKKA 158
                           57899****************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-20146IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.114147IPR002100Transcription factor, MADS-box
PfamPF003198.0E-23243IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-25268IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-16924IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-162445IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2373157IPR002487Transcription factor, K-box
PROSITE profilePS5129714.66374164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
IRRQVTFSKR RTGLVKKAQE ISVLCDADVA LIVFSPKGKL FEYSAGSSMG RILDRYERSS  60
YAGQDIPTPN LDSQGECSTE CSKLLRMIDV MQRSLRHLRG EDVDGLSIRE LQGLEMQLDT  120
AIKKTRSRKN QLMVESIAQL QKKEKELKEL KKQLTKKAGQ REDFQPQNLS HDLASSATPP  180
YEPPHELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-1267154497Developmental protein SEPALLATA 3
4ox0_B6e-1267154497Developmental protein SEPALLATA 3
4ox0_C6e-1267154497Developmental protein SEPALLATA 3
4ox0_D6e-1267154497Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.42600s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412380.0AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875532.11e-117truncated transcription factor CAULIFLOWER A
RefseqXP_020879865.11e-117truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S73e-64AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLD7LP281e-115D7LP28_ARALL; Predicted protein
STRINGAl_scaffold_0005_9141e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130331525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-112AGAMOUS-like 79
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]