PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4235s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GRF | ||||||||
Protein Properties | Length: 399aa MW: 45067 Da PI: 8.0047 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.4 | 3e-24 | 81 | 125 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks ++ Araha.4235s0002.1.p 81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLDQ 125 79***************************************9875 PP | |||||||
2 | QLQ | 62.2 | 1.3e-21 | 16 | 51 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+++++PvPpeL++ i++ Araha.4235s0002.1.p 16 PFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRR 51 9*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.4E-14 | 15 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.7E-16 | 16 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.416 | 16 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.297 | 81 | 125 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.8E-20 | 82 | 122 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR 60 LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR 120 KSLDQNQTST PLTSPSLSFP NNNNPSPTLS SSSSSSTTYS ASSSSMDAYS NSNRFGVGGS 180 SSHTRGYFNS HSLDYPYPST SPKQQQQQPL HHASALSLHQ NTNSTSQFNV LASPTDHKDF 240 RYFQGIGERV GVGERTFFPE ASRSFQDSPY HHHQQPLTTV MNDPYHHCST DHKIDHHHQT 300 YSSSSSSQQH LQHDQDHDHR QQQQQCFVLG ADMFNKPTRS VLANSSRQDQ NQEEEEKDSS 360 ESSKKSLHHF FGEDWAQNKN SSDSWLDLSS HSRLDTGS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4235s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY102638 | 0.0 | AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297825.2 | 0.0 | growth-regulating factor 5 | ||||
Swissprot | Q8L8A6 | 0.0 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | R0I2Z1 | 0.0 | R0I2Z1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297825.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 0.0 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4235s0002.1.p |