PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.42201s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 153aa MW: 16992.9 Da PI: 8.1904

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.42201s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	4	40	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky Araha.42201s0001.1.p 4 QFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 40 79999*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.522	1	45	IPR017930	Myb domain
CDD	cd00167	2.70E-7	3	41	No hit	No description
TIGRFAMs	TIGR01557	2.2E-11	3	44	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.25E-10	3	44	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-7	4	40	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-7	4	40	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MCRQFLMGLK KYGKGDWRNI ARNFVTTRTP TQVASHAQKY FIRQVNGGKD KRRSSIHDIT 60 TVNIPDSPDA AAADNATANA PCSPPSIVGS QRETSEWEGQ TLYDETTAAF YNQNAFSETL 120 LGMSSTPYMA KLQEQSFLNA SQFESYNAYL QM*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.42201s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC003028	0.0	AC003028.3 Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884801.1	1e-106	transcription factor DIVARICATA
Swissprot	Q8S9H7	2e-36	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	D7LKT0	1e-105	D7LKT0_ARALL; Myb family transcription factor
STRING	fgenesh2_kg.4__1876__AT2G38090.1	1e-105	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1228	27	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-90	MYB family protein

Link Out ? help Back to Top
Phytozome	Araha.42201s0001.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]