PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4200s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 256aa MW: 29234.5 Da PI: 9.8643 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 111 | 5.1e-35 | 99 | 211 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k ltpsdv+k++rlv+pk++ae++ +++e+++ l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L+ Araha.4200s0011.1.p 99 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssaatdTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDP 188 99**********************************99996667899******************************************* PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD+v F+++++++++l+++++r+ Araha.4200s0011.1.p 189 GDVVFFQRHRSDSRRLFIGWRRR 211 *******98889999******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-41 | 95 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-31 | 97 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.76E-27 | 98 | 202 | No hit | No description |
PROSITE profile | PS50863 | 14.579 | 99 | 212 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-27 | 99 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-32 | 99 | 211 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTNANKPHFF ISLSFVSYYI STTSTHLSLS PNPLSLYSPF ALYLSLFRFL SPRKMSVNHY 60 STDHHHTLLW QQQHRHTTDT SETTTTATWL HDDLKESLFE KSLTPSDVGK LNRLVIPKQH 120 AEKYFPLNAV VVSSAATDTS SSEKGMLLSF EDESGKSWRF RYSYWNSSQS YVLTKGWSRF 180 VKDKQLDPGD VVFFQRHRSD SRRLFIGWRR RGQGSSSAAA INSAVNTSSM GALSYHQLHA 240 TSNYSNPPSH SEYSPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-52 | 95 | 211 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-52 | 95 | 211 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4200s0011.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006700 | 0.0 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001119177.1 | 1e-123 | AP2/B3-like transcriptional factor family protein | ||||
Refseq | NP_001331851.1 | 1e-123 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9FNI3 | 1e-124 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A178UCA8 | 1e-122 | A0A178UCA8_ARATH; AP2/B3-like transcriptional factor family protein | ||||
TrEMBL | A0A384LF59 | 1e-122 | A0A384LF59_ARATH; DPA4 | ||||
STRING | AT5G06250.2 | 1e-122 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-110 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.4200s0011.1.p |