PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4196s0003.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 638aa MW: 70621.5 Da PI: 6.9833 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 455 | 492 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Araha.4196s0003.2.p 455 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 492 665569******************************88 PP | |||||||
2 | BELL | 123.7 | 7.5e-40 | 313 | 384 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Araha.4196s0003.2.p 313 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 384 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.9E-87 | 243 | 382 | IPR006563 | POX domain |
Pfam | PF07526 | 3.9E-52 | 249 | 381 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 433 | 496 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.34E-13 | 436 | 497 | No hit | No description |
SMART | SM00389 | 1.1E-9 | 436 | 500 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-17 | 437 | 503 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 439 | 502 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 453 | 492 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 638 aa Download sequence Send to blast |
MGLATTTSHH KTHHNSDFSM SQDYHHHQGI FSFSNGFHRS SSTTHQEEVD ESAVSGAQIP 60 VYETAGMLSE MFAYPGGGGG GSGGEILDQS TKQLLEQQNR HNNNNNSTLH MLLPNHHHQQ 120 GFAFTDENTM QPQQQQHHFS WPSSSDHHHN RDMIGTVHVE GGKGLSLSLS SSLAAAKAEE 180 YRSIYCAAVD GTSSSSNASA HHHQFNQFKN LLLENSSSPH HHHQVVGHFG SSSSSPMAAS 240 SSIGGIYTLR NSKYTKPAQE LLEEFCSVGR GHFKKNKLSR NNSNPNTTGG GGGGGSSSSA 300 GTTNDNPPLS PADRIEHQRR KVKLLSMLEE VDRRYNHYCE QMQMVVNSFD QVMGYGAAVP 360 YTTLAQKAMS RHFRCLKDAV AVQLKRSCEL LGDKEAAGAG STGLTKGETP RLRLLEQSLR 420 QQRAFHHMGM MEQEAWRPQR GLPERSVNIL RAWLFEHFLN PYPSDADKHL LARQTGLSRN 480 QVSNWFINAR VRLWKPMVEE MYQQEAKERE EEAEENENQQ QRRQQQTNNN DTKPNNNENN 540 FTVITAQTPT TMTSTHHEND SSFLSSVAAA SHGGSDAFTV ATCQQDVSDF HVDGDGVNVI 600 RFGTKQTGDV SLTLGLRHSG NIPDKNTSFS VRDFGDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-15 | 442 | 500 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 442 | 500 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 8e-16 | 442 | 499 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-16 | 442 | 499 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4196s0003.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF353092 | 0.0 | AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds. | |||
GenBank | AY058179 | 0.0 | AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. | |||
GenBank | AY142019 | 0.0 | AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880524.2 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_020884159.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | D7LG22 | 0.0 | D7LG22_ARALL; Uncharacterized protein | ||||
STRING | scaffold_400362.1 | 0.0 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 0.0 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4196s0003.2.p |
Publications ? help Back to Top | |||
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