PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4196s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 638aa    MW: 70621.5 Da    PI: 6.9833
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4196s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-094554921954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  Araha.4196s0003.1.p 455 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 492
                          665569******************************88 PP
2BELL123.77.5e-40313384172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  Araha.4196s0003.1.p 313 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 384
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.9E-87243382IPR006563POX domain
PfamPF075263.9E-52249381IPR006563POX domain
PROSITE profilePS5007112.86433496IPR001356Homeobox domain
CDDcd000869.34E-13436497No hitNo description
SMARTSM003891.1E-9436500IPR001356Homeobox domain
SuperFamilySSF466891.28E-17437503IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28439502IPR009057Homeodomain-like
PfamPF059202.9E-18453492IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MGLATTTSHH KTHHNSDFSM SQDYHHHQGI FSFSNGFHRS SSTTHQEEVD ESAVSGAQIP  60
VYETAGMLSE MFAYPGGGGG GSGGEILDQS TKQLLEQQNR HNNNNNSTLH MLLPNHHHQQ  120
GFAFTDENTM QPQQQQHHFS WPSSSDHHHN RDMIGTVHVE GGKGLSLSLS SSLAAAKAEE  180
YRSIYCAAVD GTSSSSNASA HHHQFNQFKN LLLENSSSPH HHHQVVGHFG SSSSSPMAAS  240
SSIGGIYTLR NSKYTKPAQE LLEEFCSVGR GHFKKNKLSR NNSNPNTTGG GGGGGSSSSA  300
GTTNDNPPLS PADRIEHQRR KVKLLSMLEE VDRRYNHYCE QMQMVVNSFD QVMGYGAAVP  360
YTTLAQKAMS RHFRCLKDAV AVQLKRSCEL LGDKEAAGAG STGLTKGETP RLRLLEQSLR  420
QQRAFHHMGM MEQEAWRPQR GLPERSVNIL RAWLFEHFLN PYPSDADKHL LARQTGLSRN  480
QVSNWFINAR VRLWKPMVEE MYQQEAKERE EEAEENENQQ QRRQQQTNNN DTKPNNNENN  540
FTVITAQTPT TMTSTHHEND SSFLSSVAAA SHGGSDAFTV ATCQQDVSDF HVDGDGVNVI  600
RFGTKQTGDV SLTLGLRHSG NIPDKNTSFS VRDFGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15442500563Homeobox protein Meis2
4xrm_B1e-15442500563Homeobox protein Meis2
4xrs_A8e-16442499158Homeobox protein Meis1
4xrs_B8e-16442499158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4196s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530920.0AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBankAY0581790.0AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBankAY1420190.0AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880524.20.0BEL1-like homeodomain protein 4
RefseqXP_020884159.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLD7LG220.0D7LG22_ARALL; Uncharacterized protein
STRINGscaffold_400362.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]