PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.41818s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 211aa MW: 23386.5 Da PI: 5.2743 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.8e-12 | 104 | 128 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+++++tG C+ Gd+C+FaHg Araha.41818s0001.1.p 104 KTELCNRWLKTGACHIGDNCPFAHG 128 9***********************9 PP | |||||||
2 | zf-CCCH | 24.3 | 5.4e-08 | 143 | 165 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 te Cr+f+++ C+yG+rC+F H Araha.41818s0001.1.p 143 TEVCRTFLAGDVCSYGNRCPFRH 165 89*******55**********77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54928 | 1.65E-5 | 1 | 71 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
CDD | cd00590 | 1.86E-4 | 6 | 72 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-13 | 98 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-10 | 101 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-10 | 104 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-8 | 136 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 137 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-4 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.953 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-5 | 143 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEQRVFLWG LDPNITEDDI FNLVDWNRET SLISVRIVPD PLFNMARAIL IYTDPKEARD 60 HATALDGFPL GIGYISTSLV SFPEGLQGER DALKLEVSRQ GMMKTELCNR WLKTGACHIG 120 DNCPFAHGTD ELTHVLTHPR YITEVCRTFL AGDVCSYGNR CPFRHWLTKS EASTMATLPT 180 VLVTGASGRT GKSFFNFVAA DFDFSSLSSG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 9e-14 | 103 | 165 | 4 | 66 | Butyrate response factor 2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.41818s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 2e-38 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.41818s0001.1.p |