PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.41631s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 133aa    MW: 15388.2 Da    PI: 7.6088
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.41631s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-09751092155
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Araha.41631s0001.1.p  75 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 109
                           679*****************************985 PP
2ELK31.83.2e-112950122
                   ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                          +LK++LlrK++++++sLk EFs
  Araha.41631s0001.1.p 29 DLKDRLLRKFGSRISSLKLEFS 50
                          69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.832949IPR005539ELK domain
PfamPF037897.5E-82950IPR005539ELK domain
SMARTSM011886.3E-52950IPR005539ELK domain
PROSITE profilePS5007112.34149112IPR001356Homeobox domain
SuperFamilySSF466893.17E-2050126IPR009057Homeodomain-like
SMARTSM003891.9E-1251116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-2854113IPR009057Homeodomain-like
CDDcd000865.37E-1158113No hitNo description
PfamPF059201.1E-1769108IPR008422Homeobox KN domain
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
DGAISSDEEL SGGDHELAED GKQRCEDRDL KDRLLRKFGS RISSLKLEFS KKKKKGKLPR  60
EARQALLDWW NLHYKWPYPT EGDKIALADA TGLDQKQINN WFINQRKRHW KPSENMPFAM  120
MDDSSGSFFT EE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.41631s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723610.0AB072361.1 Arabidopsis thaliana KNAT6S mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankAB0723620.0AB072362.1 Arabidopsis thaliana KNAT6L mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankBT0029300.0BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
GenBankBT0043700.0BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477633.12e-93PREDICTED: homeobox protein knotted-1-like 6
RefseqXP_020870554.12e-93homeobox protein knotted-1-like 6
SwissprotQ84JS61e-87KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7KNF26e-92D7KNF2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2553__AT1G23380.29e-93(Arabidopsis lyrata)
STRINGXP_010477633.18e-93(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.29e-82KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]