PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.41052s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 25021.7 Da PI: 4.9645 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 55 | 108 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F ++++ e++ +LA++lgL++rqV vWFqNrRa++k+ Araha.41052s0004.1.p 55 KRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDTRQVAVWFQNRRARWKN 108 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.4e-39 | 54 | 144 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kr+l++eqv++LE+sF e+kLe+erK +la eLgl++rqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++rLe+ev +L+e+ Araha.41052s0004.1.p 54 RKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDTRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQ 142 8***************************************************************************************9 PP HD-ZIP_I/II 91 lk 92 l Araha.41052s0004.1.p 143 LY 144 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.746 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-19 | 52 | 113 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.38E-18 | 54 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.63E-16 | 54 | 110 | No hit | No description |
Pfam | PF00046 | 1.7E-17 | 55 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 56 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MNHTVDDHNM AFISQLYPDV YTQIVPQQGE VKQPKRRRKK SKGASGDGSN SLFRKRKLTD 60 EQVNMLEMSF GDEHKLESER KDRLAAELGL DTRQVAVWFQ NRRARWKNKR LEEEYNKLKN 120 SHDNVVVDKC RLESEVIQLK EQLYDAEREI QRLAERVEGG SSNSPISSSV SVEANEAPFF 180 GDYKVGDDGD DYDNFFYPVP ENSYIDEAEW MSLYI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 56 | RKKSKGASGDGSNSLFRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.41052s0004.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161589 | 1e-130 | AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85. | |||
GenBank | AL161590 | 1e-130 | AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86. | |||
GenBank | CP002687 | 1e-130 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99708 | 1e-130 | Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866994.1 | 1e-142 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-137 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | D7MBE6 | 1e-141 | D7MBE6_ARALL; Homeobox-leucine zipper protein ATHB-40 | ||||
STRING | fgenesh2_kg.7__393__AT4G36740.1 | 1e-141 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-109 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Araha.41052s0004.1.p |
Publications ? help Back to Top | |||
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