PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.40678s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 122aa MW: 13395.3 Da PI: 6.5767 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 28.2 | 4.5e-09 | 17 | 58 | 17 | 59 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + g+ D C+ f++ g+egt++a+ C CgCH FH ++v+ Araha.40678s0001.1.p 17 IDGEPKDHCRHFLAG-GDEGTPEAFFCRGCGCHVCFHWKDVKM 58 6678889*******8.999******************999875 PP | |||||||
2 | ZF-HD_dimer | 81.9 | 7.4e-26 | 67 | 119 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+Y +ClkNh a++Ggh ++DGCgEfm++ geegt++al CaACgCHR+FH ++ Araha.40678s0001.1.p 67 VKYGKCLKNHTAHMGGHcSLDGCGEFMAA-GEEGTPEALSCAACGCHRSFHEKD 119 89***************458********9.999******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-5 | 17 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.4E-7 | 18 | 55 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-13 | 62 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.9E-24 | 67 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-22 | 68 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.11 | 69 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSKWREIVTY GMCVNRIDGE PKDHCRHFLA GGDEGTPEAF FCRGCGCHVC FHWKDVKMEI 60 DMSTAIVKYG KCLKNHTAHM GGHCSLDGCG EFMAAGEEGT PEALSCAACG CHRSFHEKDY 120 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.40678s0001.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420655.1 | 2e-78 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
TrEMBL | A0A1J3ELS0 | 1e-56 | A0A1J3ELS0_NOCCA; Mini zinc finger protein 1 (Fragment) | ||||
STRING | XP_010420655.1 | 6e-78 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17489 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-19 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Araha.40678s0001.1.p |