PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3974s0023.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HRT-like
Protein Properties Length: 403aa    MW: 44786.5 Da    PI: 9.2264
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3974s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like57.42.4e-18199228130
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                          +CGv+ledG++C+++P+kgRKRC eHKG+R
  Araha.3974s0023.1.p 199 VCGVLLEDGTTCSTTPIKGRKRCSEHKGKR 228
                          7****************************9 PP
2HRT-like45.61.2e-14254284131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCGvil d   C+++Pv  RKRCe HKGmR+
  Araha.3974s0023.1.p 254 ICGVILPDMVRCRTKPVSRRKRCEDHKGMRV 284
                          8*****************************7 PP
3HRT-like28.23.2e-09324351229
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 
                          C +++++G +C+r++ +g  RC++HK++
  Araha.3974s0023.1.p 324 CEATTKNGLPCTRSAPEGSRRCWQHKDK 351
                          99************************86 PP
4HRT-like64.11.9e-20370400131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCG++l +GsvC+++PvkgRKRCeeHKGmRi
  Araha.3974s0023.1.p 370 ICGFKLYNGSVCEKSPVKGRKRCEEHKGMRI 400
                          8*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MFKRDDYIRT NHDAVSSKWQ GFARSMLLRK PISETAELRK TFAGYSLISR DLGPKILIGA  60
NDKENFRQGK DLLGRYRVQG AFPGLYELGH DHGRKDDVLV ANLGQADSIR SRLRSYSRSF  120
AHHDLLKKGL SQTILPTTQN KSGNGTEEKK SDSAEEREVS SDAAEGNSLP SILRISPSRP  180
QPVSDRHDDI VDGSDSASVC GVLLEDGTTC STTPIKGRKR CSEHKGKRLS RVSPEKHIPC  240
EAPTVRECKE TEDICGVILP DMVRCRTKPV SRRKRCEDHK GMRVNAFFFL LNPTERDTAV  300
KEDKSKSETC TGMNQEDSSP VLFCEATTKN GLPCTRSAPE GSRRCWQHKD KTLNHGSSEN  360
VQSATVSQVI CGFKLYNGSV CEKSPVKGRK RCEEHKGMRI TS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3974s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0491710.0AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project).
GenBankAL0494830.0AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615640.0AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869624.10.0protein EFFECTOR OF TRANSCRIPTION 1
SwissprotF4JU690.0ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1
TrEMBLD7MFC20.0D7MFC2_ARALL; Uncharacterized protein
STRINGscaffold_701687.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.10.0