PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.39182s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9335.17 Da PI: 8.9618 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT E +l+ +a + + + +W+ +ar +g g+++++++ ++ Araha.39182s0006.1.p 11 SWTRKENKLFERALATYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 55 6*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.363 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 8.6E-10 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 11 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.22E-14 | 11 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-7 | 12 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 82 aa Download sequence Send to blast |
MASNSMSSSA SWTRKENKLF ERALATYDQD TPDRWHNVAR AVGGKSAEEV RRHYELLIRD 60 VNDIESGRYP HPNYRSNGNS H* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-30 | 1 | 78 | 1 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.39182s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT010770 | 1e-116 | BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds. | |||
GenBank | BT011255 | 1e-116 | BT011255.1 Arabidopsis thaliana At4g36570 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002869031.1 | 3e-54 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 3e-55 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | D7MBG5 | 8e-53 | D7MBG5_ARALL; At4g36570 | ||||
STRING | scaffold_700452.1 | 1e-53 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-34 | RAD-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.39182s0006.1.p |