PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.38650s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 297aa    MW: 33206.6 Da    PI: 9.73
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.38650s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind344.92e-10512961301
             GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 
                           m++ g+++  r+k+ y++                ++++l   +++++ms++aerda+++ern+a+s+kk+ava+rd+a++qrdkal+er
  Araha.38650s0006.1.p   1 MENGGQYDngRFKPdYFKgaqsmwnmmpqhqikeQHNALV--MNKKIMSILAERDAAVHERNQAVSAKKEAVAARDEALQQRDKALSER 87 
                           9999999999****9999*********9888765446666..99********************************************* PP

             GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkp 159
                           +kal+erdn+++al+++ensl++a       lsg k +d          +d+++++ e +kl++ p+++ ++e+++ +k+ kr+   k+
  Araha.38650s0006.1.p  88 DKALIERDNAYAALQHHENSLNFA-------LSGGKRVD----------GDDCFGIGEPHKLHVVPLSTIPPEVTNGTKVTKRK---KE 156
                           *******************96655.......59999999..........799*********************99998888433...33 PP

             GAGA_bind 160 kekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                            ++ ++k+kk +e+ +++v++++  ++s+++++s+d++ln v++De+t+PvP+C+CtG+ +qCYkWGnGGWqS+CCttt+S+yPLP+++
  Araha.38650s0006.1.p 157 NKQGQSKVKKVGEDLNRRVAAPG--KKSRTDWDSQDVGLNLVTFDETTMPVPMCTCTGSAHQCYKWGNGGWQSSCCTTTLSQYPLPQMP 243
                           34455678888999*********..57************************************************************** PP

             GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           ++r++R++grKmS+++f++lL++LaaeGydls+pvDLkd+WA+HGtn+++ti+
  Araha.38650s0006.1.p 244 NKRHSRMGGRKMSGNVFSRLLSRLAAEGYDLSCPVDLKDYWARHGTNRYITIK 296
                           ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.6E-1711296IPR010409GAGA-binding transcriptional activator
PfamPF062176.3E-9413296IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MENGGQYDNG RFKPDYFKGA QSMWNMMPQH QIKEQHNALV MNKKIMSILA ERDAAVHERN  60
QAVSAKKEAV AARDEALQQR DKALSERDKA LIERDNAYAA LQHHENSLNF ALSGGKRVDG  120
DDCFGIGEPH KLHVVPLSTI PPEVTNGTKV TKRKKENKQG QSKVKKVGED LNRRVAAPGK  180
KSRTDWDSQD VGLNLVTFDE TTMPVPMCTC TGSAHQCYKW GNGGWQSSCC TTTLSQYPLP  240
QMPNKRHSRM GGRKMSGNVF SRLLSRLAAE GYDLSCPVDL KDYWARHGTN RYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.38650s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290900.0AK229090.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-37-J01.
GenBankAK3171650.0AK317165.1 Arabidopsis thaliana AT2G21240 mRNA, complete cds, clone: RAFL21-54-A06.
GenBankAY0845540.0AY084554.1 Arabidopsis thaliana clone 111536 mRNA, complete sequence.
GenBankBT0261090.0BT026109.1 Arabidopsis thaliana At2g21240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885000.10.0protein BASIC PENTACYSTEINE4
RefseqXP_020885001.10.0protein BASIC PENTACYSTEINE4
RefseqXP_020885003.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C60.0BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLD7LL180.0D7LL18_ARALL; ATBPC4/BBR/BPC4/BPC4
STRINGfgenesh2_kg.4__42__AT2G21240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.20.0basic pentacysteine 4