PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3726s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 313aa    MW: 34770.9 Da    PI: 6.056
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3726s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.41.1e-25163216155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +pr+r +peLHerF+eav++L G+ekAtPk++++lm+v++Lt+++vkSHLQ YRl
  Araha.3726s0010.1.p 163 RPRMRSSPELHERFLEAVNKLEGPEKATPKAVMKLMNVESLTIYQVKSHLQ-YRL 216
                          59************************************************9.776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23162217IPR009057Homeodomain-like
SuperFamilySSF466891.0E-11163215IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-18164215IPR006447Myb domain, plants
PfamPF002497.8E-6169214IPR001005SANT/Myb domain
PfamPF143792.5E-9252288IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNSHSLLSMD GGNNAYCSSS LSPSPLLNFL NTNYLPLETR DFSKGSFSRS SAFCNLSSSS  60
SSDTQKHLGT TLPFLPNPPT ETTSPLTFTE DLLLSSTPCH GGDSAFLTLY GDFLSDELQL  120
AITDRAETPR LDDIYQVNHG QNCVPAAMSV TTEPSPGSAV NHRPRMRSSP ELHERFLEAV  180
NKLEGPEKAT PKAVMKLMNV ESLTIYQVKS HLQYRLAKYM PERKPEENGN SEEKKPASNT  240
NEADGRKKGA IQLTEALRMQ MEVQRSLQLQ IEEHAKYLEN ILEEQHKSCK TDASEAKDDK  300
CETSRKRPRL EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-18163219259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3726s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590547.11e-126PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ949U21e-95PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A0D3CR461e-125A0A0D3CR46_BRAOL; Uncharacterized protein
STRINGBo6g035910.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1913667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.22e-91G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]