PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.36669s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 724aa    MW: 80639.8 Da    PI: 8.3726
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.36669s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16328427198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd++  gr+vlpkk+ae++  ++++++++ lt++d+ g++W+++++++ ++++  yvl+ G     ++ +L++gD+v+F++ 
  Araha.36669s0003.1.p 328 FEKMLSASDTGIVGRVVLPKKCAEAFlpQLSHTQGVPLTVQDPMGKEWTFQFRFWPSRNSriYVLE-GVTPCIQSLQLQAGDTVIFSRL 415
                           8999************************9999**********************777777768888.********************66 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +  e++l +++++
  Araha.36669s0003.1.p 416 D-PERKLILGFRK 427
                           5.66667777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-25320435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17325427IPR015300DNA-binding pseudobarrel domain
CDDcd100178.97E-20326427No hitNo description
SMARTSM010191.2E-17328429IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56328429IPR003340B3 DNA binding domain
PfamPF023622.4E-13328427IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGQFCDV  60
FHQRASGWRC CESCGKQIHC GCIVSASAFT LLDAGGIECL ACARKKVALG SNFSPSPSFL  120
FQSPISEKFN DLSINWSSST RSNQISYQPP SYLGPSALQF DLCNRGGNNE FSQPTSKDRA  180
TACPMGKKRG MNDMIGKLMS ENSKHYKVSP FPNVNLYHPL ISIKEGPCGT QLAFPVPITT  240
PIEKTGHSRL DGSNLWHTPN SSPLSRLHND LNGGSDSPFE SKSRNVRTHL DTPGKYQVVP  300
RYWPKVSYKN QVLQNQSKES ESVLTPLFEK MLSASDTGIV GRVVLPKKCA EAFLPQLSHT  360
QGVPLTVQDP MGKEWTFQFR FWPSRNSRIY VLEGVTPCIQ SLQLQAGDTV IFSRLDPERK  420
LILGFRKASV TRSSDQQAET ADMHSPSKVK KSAYITKESP GVECSSGKKK SSMMITRSKR  480
QKVEKGDHNL LKLTWEEAQG FLLPPPNLTP SRVVIEDYEF EEYEDAPIIG KPTDAAGFRS  540
TCTEVEGLLI SPTTTKHPRH RNGCTCIVCI QSPSGIGPKH DRRCSCAVCE TNKRRRRSLL  600
LRREKMQMEK EDNAHKELEQ LNSDNGLHQS ANNSENHECH DSPERHASSL KSQLDLNFKP  660
EKDEESLPGS NKTTENKTFH HNDTVNSSFK SPSSSSAHSQ INKEDEGKLR KNTEVADTTT  720
SSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-473084293124B3 domain-containing transcription repressor VAL1
5yzz_C4e-473084293124B3 domain-containing transcription repressor VAL1
5z00_C4e-473084293124B3 domain-containing transcription repressor VAL1
5z00_G4e-473084293124B3 domain-containing transcription repressor VAL1
5z00_K4e-473084293124B3 domain-containing transcription repressor VAL1
5z00_M4e-473084293124B3 domain-containing transcription repressor VAL1
6fas_A3e-473244295110B3 domain-containing transcription repressor VAL1
6fas_B3e-473244295110B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.36669s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226030.0AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615550.0AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873325.10.0B3 domain-containing transcription factor VAL3 isoform X1
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLD7MES50.0D7MES5_ARALL; Uncharacterized protein
STRINGscaffold_702259.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3