PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3609s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 156aa    MW: 17704.8 Da    PI: 8.3417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3609s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-19963256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++ ++t+eq+++Le++F  n+++  + + +L+++lgL++rqV +WFqN+Ra+ k
  Araha.3609s0002.1.p  9 KNKKRLTQEQVRQLEKCFTVNKKLEPDLKLQLSNQLGLPQRQVAIWFQNKRARSK 63
                         677889***********************************************99 PP
2HD-ZIP_I/II101.19.6e-3310101293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +k+rl++eqv++LE++F+ ++kLep+ K +l+++Lgl +rqva+WFqn+RAR kt+ lE+++ +L+++++a  +++++Le++v+ L++el
  Araha.3609s0002.1.p  10 NKKRLTQEQVRQLEKCFTVNKKLEPDLKLQLSNQLGLPQRQVAIWFQNKRARSKTQSLEVQHCTLQSKLEAALSDKAKLEHQVQFLQDEL 99 
                          79***************************************************************************************9 PP

          HD-ZIP_I/II  92 ke 93 
                          k+
  Araha.3609s0002.1.p 100 KR 101
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-18466IPR009057Homeodomain-like
PROSITE profilePS5007116.908565IPR001356Homeobox domain
SMARTSM003898.3E-17769IPR001356Homeobox domain
PfamPF000463.6E-16963IPR001356Homeobox domain
CDDcd000869.21E-15966No hitNo description
Gene3DG3DSA:1.10.10.608.7E-181168IPR009057Homeodomain-like
PROSITE patternPS0002704063IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MENSQSQSKN KKRLTQEQVR QLEKCFTVNK KLEPDLKLQL SNQLGLPQRQ VAIWFQNKRA  60
RSKTQSLEVQ HCTLQSKLEA ALSDKAKLEH QVQFLQDELK RSRNQLALFT NQDSPVNNSN  120
LGSCDEGHDD QVVVFDELYA CFVSNGHGSS STSWV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3609s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076440.0AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17.
GenBankAK2292110.0AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21.
GenBankBT0159270.0BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds.
GenBankBT0219200.0BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879304.11e-107homeobox-leucine zipper protein ATHB-52
SwissprotQ9FN291e-103ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLD7MTN01e-106D7MTN0_ARALL; ATHB52
STRINGfgenesh2_kg.8__1293__AT5G53980.11e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-105homeobox protein 52