PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3539s0014.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 299aa    MW: 34118.2 Da    PI: 4.696
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3539s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix347.6e-111997280
             trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
                         W  +  l L++    +e + +++ +  ++W  +s+++ +  ++r+ +qC+ kw++l  ++ +ik++e++ +   +s ++
  Araha.3539s0014.1.p 19 WAVKDCLILVNEIAAVEADCSNALSSFQKWTMISENCNALDVRRNLNQCRRKWDSLVSDFNQIKQWESQYRGSGRSYWS 97
                         778888888888899999999999999*****************************************98666665665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-72395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEEGTSGSRR TRSQVAPDWA VKDCLILVNE IAAVEADCSN ALSSFQKWTM ISENCNALDV  60
RRNLNQCRRK WDSLVSDFNQ IKQWESQYRG SGRSYWSLSS DKRKLLNLPG NIDIELFEAI  120
SAVVMIQDEK AGTESDSDPE AQDIVDVTTE LAFVGSKRSR QRTMVMKENP PQKTNKEEPR  180
KSRVQVNTRE KHITTKATHQ NKTMEEKKPM EDISTDEEEE EEETMNIEEE VEVMEAKLSY  240
KIDLIHAIVG RNLAKDNETR DGISMDDKLK FVRQQGDELI GCLSEIVSTL NRLREVPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161KRSRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3539s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186740.0AK118674.1 Arabidopsis thaliana At4g31270 mRNA for unknown protein, complete cds, clone: RAFL19-94-K08.
GenBankBT0052870.0BT005287.1 Arabidopsis thaliana At4g31270 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194855.20.0sequence-specific DNA binding transcription factor
TrEMBLA0A178UYC30.0A0A178UYC3_ARATH; Uncharacterized protein
TrEMBLQ8GWR80.0Q8GWR8_ARATH; At4g31270
STRINGAT4G31270.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-180sequence-specific DNA binding transcription factors