PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3499s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 348aa    MW: 38997.5 Da    PI: 5.2067
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3499s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.82.2e-3570165398
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          + r+w+eeDe+++L+Gl+d++aktg +++ d+dafy+f+  si +k+sk+q+++Kir+LK++f  +++k+++g++p+f++++d+++f++s
  Araha.3499s0009.1.p  70 IVRIWNEEDELAILKGLVDYRAKTGFQSKIDWDAFYRFLGVSIVAKFSKEQVLSKIRKLKRRFLVHWEKINEGNDPKFTRSSDSEAFGFS 159
                          68**************************************************************************************** PP

               DUF573  93 kkiWgs 98 
                          ++iWg+
  Araha.3499s0009.1.p 160 SMIWGQ 165
                          ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-2671164IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVSPKQLDFS SSGGAGDSDD TLSRRKSPRN RPSKRAASDG LEAEADEETM KKKKKKMKKK  60
KKKTVGPPLI VRIWNEEDEL AILKGLVDYR AKTGFQSKID WDAFYRFLGV SIVAKFSKEQ  120
VLSKIRKLKR RFLVHWEKIN EGNDPKFTRS SDSEAFGFSS MIWGQNEAEF GNDDGMDKEP  180
ENGAAENGTA RIAQQNESGE EILKEHEETL NENGAAKITD NNGTTQIAQQ SESEEDMLKE  240
HEEVTNTEPI NENGVAKTTE KGTTAGKESH DDDDDELCAV RDAFEAVMSQ GLSDYQKKLQ  300
LDKLINLGTG KRRELSDEWK ALCVEERRLN IKKLRFSAKL AEAANDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15162KKKKKMKKKKKK
25262KKKKMKKKKKK
35462KKMKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3499s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060531e-176AC006053.3 Arabidopsis thaliana chromosome 2 clone F3N11 map B68, complete sequence.
GenBankAY0721641e-176AY072164.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds.
GenBankAY0842231e-176AY084223.1 Arabidopsis thaliana clone 100283 mRNA, complete sequence.
GenBankAY0964171e-176AY096417.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds.
GenBankCP0026851e-176CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884342.10.0GLABROUS1 enhancer-binding protein-like 1
SwissprotQ8VYD21e-180STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBLD7LL731e-169D7LL73_ARALL; Predicted protein
STRINGAT2G25650.11e-179(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.11e-156DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]