PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.3433s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 268aa MW: 29708 Da PI: 9.6408

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.3433s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	68.6	1.3e-21	2	64	36	98
DUF573 36 afyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke+ f+++hdq +f++s+kiW++ Araha.3433s0001.1.p 2 PFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVFFKSPHDQATFDISRKIWNQ 64 69***********************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-20	2	63	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
APFYEQIKSK LQLDFNKNQL VEKLRRLKKK YRNVMSKFSS GKEVFFKSPH DQATFDISRK 60 IWNQTGKIIG FEDNNVMDFE ETNHVNNSNG SSSFNVSIVN VDVDSENGLE KKVTISRKRS 120 RSRIGKIDED KPVIAPCDGL MPNTVNLNEN VAVAAGDFSD GRNLGGLIEE TVKNCVSPMI 180 KEMMNGTTGM MMAAMGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGEER WRRQQILELE 240 VYSRRLELVQ EQIRATVNEL KKMPNGG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	122	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.3433s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007627	0.0	AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001318667.1	1e-180	DNA-binding storekeeper protein-related transcriptional regulator
Refseq	NP_198156.1	1e-180	DNA-binding storekeeper protein-related transcriptional regulator
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	D7M6T0	1e-177	D7M6T0_ARALL; Uncharacterized protein
STRING	AT5G28040.1	1e-179	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-125	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Araha.3433s0001.1.p

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]