PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.33991s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 274aa    MW: 29841.6 Da    PI: 7.6985
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.33991s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18112166256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tkeq   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Araha.33991s0001.1.p 112 RKKLRLTKEQSALLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
                           788899***********************************************98 PP
2HD-ZIP_I/II123.88.1e-40112201191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+keq++lLE+sF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en rL+ke +eL+ 
  Araha.33991s0001.1.p 112 RKKLRLTKEQSALLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENMRLQKEIQELK- 199
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  Araha.33991s0001.1.p 200 TL 201
                           54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.941108168IPR001356Homeobox domain
SMARTSM003895.7E-16110172IPR001356Homeobox domain
SuperFamilySSF466891.58E-18110176IPR009057Homeodomain-like
CDDcd000861.01E-16112169No hitNo description
Gene3DG3DSA:1.10.10.603.7E-17112166IPR009057Homeodomain-like
PfamPF000461.2E-15112166IPR001356Homeobox domain
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PfamPF021833.8E-9168201IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-22168211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSPT PNNYSSAIRR SSGCKLEPSL TLSLSGDPSV TVVTGADQLC  60
RQTSSHSGVS SFSSGRVVKR ERDGREESPE EEETTERVIN DYNEDEEGIS ARKKLRLTKE  120
QSALLEDSFK HHSTLNPKQK QVLARQLNLR PRQVEVWFQN RRARTKLKQT EVDCELLKKC  180
CETLTDENMR LQKEIQELKT LKLTHQPFYM HMPASTLTMC PSCEIIGAGG GNGGGGGSVA  240
TAVVVDGSTA KGAFSISSKP HFFNPFTNPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.33991s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292180.0AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885765.11e-178homeobox-leucine zipper protein HAT9
SwissprotP466031e-151HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLD7LE401e-177D7LE40_ARALL; Homeobox-leucine zipper protein 9
STRINGfgenesh2_kg.4__202__AT2G22800.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-137HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]