PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.33745s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 183aa MW: 20665.2 Da PI: 6.3305

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.33745s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.7	3.3e-37	7	104	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC++dCv++pyf eq +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA r+rdPvyG+v++i++l+qq+ Araha.33745s0001.1.p 7 SCGACKFLRRKCNRDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLHLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVV 95 6*********************9978********************************************************* PP DUF260 89 qlkaelall 97 +l++e++ l Araha.33745s0001.1.p 96 TLQEEIEFL 104 ***9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.29	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-34	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MAGHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPLHQ 60 RSVAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IEFLISQMTN FSHSTQNGSQ 120 LNNIPEIVNQ MTVDTTSFVD ESVLNNDDGR NCLDGFFTNS EEMLVNHQWL QNMDYYYYAP 180 QN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	3	132	7	130	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	3	132	7	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.33745s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473857	0.0	AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873236.1	1e-132	LOB domain-containing protein 33
Swissprot	Q9LHS8	1e-122	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	D7LZ36	1e-130	D7LZ36_ARALL; Predicted protein
STRING	Al_scaffold_0006_527	1e-131	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-124	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Araha.33745s0001.1.p

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]