PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.3362s0037.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 234aa MW: 26700.9 Da PI: 6.5267

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.3362s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.4e-07	38	87	2	44
SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg......tWktIartmg.kgRtlkqcksrw 44 ++WT eEde+lv++ + ++ + ++Ia+ + k+ + ++srw Araha.3362s0037.1.p 38 MNWTSEEDERLVRLLDSYSSEsssavtRYSKIAAGFEnKTIRDVAVRSRW 87 58***********************************8888888999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.44E-5	27	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-6	39	99	IPR009057	Homeodomain-like
CDD	cd00167	0.00677	39	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MANPPWTTEE MNHHKAYSGN LTTPSESSSL KSQSGIAMNW TSEEDERLVR LLDSYSSESS 60 SAVTRYSKIA AGFENKTIRD VAVRSRWIYK KKENAKRRKE DHNNGLGRAR VDNKEIIDMV 120 VASQVFQPTQ VFQPTQVFQP TQVFQPSQHG VENQLLKQNE QWFNQICANF TSFSVTENLD 180 LFSKIWENIN SLVKNLNENV SETWKQMPPL PEKLNDELLC DLYKAISPSS NLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.3362s0037.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884214.1	1e-124	uncharacterized protein LOC110229173
TrEMBL	D7KY89	1e-103	D7KY89_ARALL; Uncharacterized protein
STRING	scaffold_200757.1	1e-104	(Arabidopsis lyrata)

Link Out ? help Back to Top
Phytozome	Araha.3362s0037.1.p