PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.3362s0033.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 926aa MW: 102241 Da PI: 5.4261

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.3362s0033.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	579	629	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Araha.3362s0033.2.p 579 EKNVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 629 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.87	568	649	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-28	581	629	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.24E-21	814	910	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.5E-22	823	904	No hit	No description
PROSITE profile	PS51745	20.617	825	907	IPR000270	PB1 domain
SMART	SM00666	3.8E-23	825	907	IPR000270	PB1 domain
CDD	cd06407	1.06E-37	826	906	No hit	No description
Pfam	PF00564	6.5E-17	828	906	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MENPFASREK GFGNYSDFPT EHMDGLSTTF GSGVRSLLSD DMLNSSSELM NFDSFAAWCN 60 SPSATDILFT QYGLSNSQPM PFGAFTSFHA AEPKATSLTR SFHDLESSYY GQERSSVQEL 120 SSQFHRSSDS DELSGKRRKV VVNQKIGFPN VLNCTIPRSL SHSLDEKMLK ALSLFMESSG 180 SGEGILAQVW TPIRTGDQYL LSTCDQAYLL DPRLSQYREV SRKFTFAAEA NQSSFPGLPG 240 RVFISGVPEW TSNIMYYKAD EYLRMKHAID NEVRGSIAIP ILEASGTSCC AVMELVTSKE 300 KPNFDMEMDS VCRALQAVNL RTSAIPRPQY LSSSQRDALA EIQDVLRAVC HAHKLPLALA 360 WIPCRKDQSI RVSGPKSGEN YILCIEETTC YVNDMEMEGF LHACLEHCLR EREGIVGKAF 420 ISNQPFFSSD VKAYDISEYP IVQHARKYGL NAAVAIKLRS TYTGEDDYIL ELFLPVSMKG 480 SLEQQLLLDS LSGTMQRICR TLRTVSEVGS TKKEVSNFPQ ITSLGNFQTR SLDSEVDSTR 540 SIFSGMSSEK ENSITVSQGA LEQDMSKAGT PEKKKSTTEK NVSLSALQQH FSGSLKDAAK 600 SLGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL KFDSTTGEFI 660 AVGPLIQEFD TQKGLSSHGN DAHAKRSQED MADDTSFELH EAKFVDNAIK LEEDIIMNQA 720 RPGSFMEINA SGQPWGWMAE QSGLNDSEGI KSVCNLSSLE ISDGMDPTIR CSGNIVEPNK 780 SMSCSISDSS NGSGAVLRGS SSTSMEDWNQ MRTHNNNSGE SGSTTLIVKA TYREDTVRFK 840 FEPSVGCPQL YKEVGKRFKL QDGSFQLKYL DDEEEWVMLV IDSDLQECLE ILYGMGKHSV 900 KFLVRDLPAP IGSSGGSNGY LGTGL*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MENPFASREK GFGNYSDFPT EHMDGLSTTF GSGVRSLLSD DMLNSSSELM NFDSFAAWCN  60
SPSATDILFT QYGLSNSQPM PFGAFTSFHA AEPKATSLTR SFHDLESSYY GQERSSVQEL  120
SSQFHRSSDS DELSGKRRKV VVNQKIGFPN VLNCTIPRSL SHSLDEKMLK ALSLFMESSG  180
SGEGILAQVW TPIRTGDQYL LSTCDQAYLL DPRLSQYREV SRKFTFAAEA NQSSFPGLPG  240
RVFISGVPEW TSNIMYYKAD EYLRMKHAID NEVRGSIAIP ILEASGTSCC AVMELVTSKE  300
KPNFDMEMDS VCRALQAVNL RTSAIPRPQY LSSSQRDALA EIQDVLRAVC HAHKLPLALA  360
WIPCRKDQSI RVSGPKSGEN YILCIEETTC YVNDMEMEGF LHACLEHCLR EREGIVGKAF  420
ISNQPFFSSD VKAYDISEYP IVQHARKYGL NAAVAIKLRS TYTGEDDYIL ELFLPVSMKG  480
SLEQQLLLDS LSGTMQRICR TLRTVSEVGS TKKEVSNFPQ ITSLGNFQTR SLDSEVDSTR  540
SIFSGMSSEK ENSITVSQGA LEQDMSKAGT PEKKKSTTEK NVSLSALQQH FSGSLKDAAK  600
SLGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL KFDSTTGEFI  660
AVGPLIQEFD TQKGLSSHGN DAHAKRSQED MADDTSFELH EAKFVDNAIK LEEDIIMNQA  720
RPGSFMEINA SGQPWGWMAE QSGLNDSEGI KSVCNLSSLE ISDGMDPTIR CSGNIVEPNK  780
SMSCSISDSS NGSGAVLRGS SSTSMEDWNQ MRTHNNNSGE SGSTTLIVKA TYREDTVRFK  840
FEPSVGCPQL YKEVGKRFKL QDGSFQLKYL DDEEEWVMLV IDSDLQECLE ILYGMGKHSV  900
KFLVRDLPAP IGSSGGSNGY LGTGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.3362s0033.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	AY102562	0.0	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	0.0	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	0.0	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020883776.1	0.0	protein NLP8 isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	D7LK24	0.0	D7LK24_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.4__2522__AT2G43500.1	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Araha.3362s0033.2.p

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]