PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3358s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 638aa    MW: 71844.2 Da    PI: 6.5722
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3358s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.12e-24114215199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF 
  Araha.3358s0004.1.p 114 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL 201
                          88****************************9643..445569************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++el+v+v+r+
  Araha.3358s0004.1.p 202 --RGENGELRVGVRRA 215
                          ..449999******97 PP
2Auxin_resp112.34.8e-37240319183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a ha++tk++F v+Y+Pr+  s+F+++++k+++a+++k+s+GmRfkm+fe+eds+err+sGtv+gv+d++p +W++SkWr+L+
  Araha.3358s0004.1.p 240 ARHATQTKTMFIVYYKPRT--SQFIISLNKYLEAMSNKFSIGMRFKMRFEGEDSPERRYSGTVIGVNDCSP-HWKDSKWRCLE 319
                          6799**************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-38106243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-42108229IPR015300DNA-binding pseudobarrel domain
CDDcd100176.82E-21112214No hitNo description
SMARTSM010194.6E-24114216IPR003340B3 DNA binding domain
PfamPF023623.6E-22114215IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731114216IPR003340B3 DNA binding domain
PfamPF065076.3E-33240318IPR010525Auxin response factor
PfamPF023097.0E-8500558IPR033389AUX/IAA domain
SuperFamilySSF542777.85E-13520598No hitNo description
PROSITE profilePS5174525.274522622IPR000270PB1 domain
PfamPF023091.3E-6563610IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MGGGEYLYDE LWKLCAGPLV DVPQAQERVY YFPQGHMEQL EASTQQVDLN TMKPLFVLPP  60
KILCNVMNVS LQAEKDTDEV YAQITLIPVG TEVDEPTSPD PSPPELQRPK VHSFSKVLTA  120
SDTSTHGGFS VLRKHATECL PPLDMTQQTP TQELVAEDVH GYQWKFKHIF RGQPRRHLLT  180
TGWSTFVTSK RLVAGDTFVF LRGENGELRV GVRRANRQQS SMPSSVISSH SMHLGVLATA  240
RHATQTKTMF IVYYKPRTSQ FIISLNKYLE AMSNKFSIGM RFKMRFEGED SPERRYSGTV  300
IGVNDCSPHW KDSKWRCLEV HWDEPASISR PNKVSPWEIE PFVTSENVPK SVMLKNKRPR  360
QVSEVSALDV GGITASNLWS SVLTQSHEFA QSCITSSWSS PQQCPRDATE DAKKSDWLNN  420
FYSVSNVSKD STLNDQMVSP VEQKKPETTA NYRLFGIDLM STSLAASEEK TAPMRPINTS  480
KPTMDSHSDP KSEISKVSEE KKQEPAEGSP KEVQSKQSSS ARSRTKVQMQ GVPVGRAVDL  540
TALKGYNELI DDIEKLFDIK GELQSRNQWE IVFTDDEGDM MLVGDDPWPE FCNMVKRIFI  600
WSKEEVKKMT PGNQLRMLLT EVETTLTTAS KTDNHTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-161734219355Auxin response factor 1
4ldw_A1e-161734219355Auxin response factor 1
4ldw_B1e-161734219355Auxin response factor 1
4ldx_A1e-161734219355Auxin response factor 1
4ldx_B1e-161734219355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3358s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0821760.0AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869750.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLD7M8Z20.0D7M8Z2_ARALL; Auxin response factor
STRINGAl_scaffold_0007_17520.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9