PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32924s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 148aa    MW: 16602.5 Da    PI: 7.916
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32924s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-085879526
                          --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          lC++f  + +C++Gd+C++ H+
  Araha.32924s0003.1.p 58 LCNRFITSNFCPFGDSCRYVHP 79
                          8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0016338IPR003604Zinc finger, U1-type
SuperFamilySSF576677.79E-12451No hitNo description
PfamPF062202.2E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.315381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-65879IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-55879IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSDLINHQV SNFATKGLCN  60
RFITSNFCPF GDSCRYVHPN NNPGSTDAGL TNNTQLHGDM LNQHIEGSTL NRDYVSGRPG  120
AGWFDLPPSL KPPPEHGYPQ LPFIDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32924s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007329e-51AJ000732.1 Arabidopsis thaliana ASKalpha gene.
GenBankCP0026889e-51CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P169e-51AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874322.11e-96zinc finger CCCH domain-containing protein 3
TrEMBLD7M5C73e-95D7M5C7_ARALL; Uncharacterized protein
STRINGscaffold_602796.15e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-96C3H family protein